Gene Information

Name : clpA (DGo_CA1460)
Accession : YP_006260845.1
Strain : Deinococcus gobiensis I-0
Genome accession: NC_017790
Putative virulence/resistance : Virulence
Product : ATPase AAA-2
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1586433 - 1588676 bp
Length : 2244 bp
Strand : +
Note : -

DNA sequence :
ATGACCAACCGATACGACGACCGCGCCCGCCTGGTGTTTCATTACGCCCGCGAGGAGGGCAACCGCCTGGGCCACGCGAT
GGTCGGCCCGGAACACCTGCTGCTGGGCCTGATGCGTGAAGGCGGCACCGCCGCCGGCATCCTCGGGGAATTCGGAGCCT
CGCTCGACGGCCTGCGCCGCCGCGTCGAGGAAATCATCGGGCGCGGCGAGGGCAACCGCCTCAACGACGCCCCCAGCATC
ACCCCGCGCGCCCGGCGCGTCATGGAACTCGCCAGCAGCGAGGCCCGTGGCCTGGGCGCGCAGGTCACCTCGACCGAGCA
CATCCTGCTGGGCATCATCCGCGAGGGCGACGGCGTGGCCTTCCGCATCCTCCAGGAACTCACCAAGGACGTGGACACCA
TCCGCTGGCGCATCCTCGCGCAGGGCGAGCAAGGGGGAGGCAAGCCCGCCAAGCCGGTCGCCACGCCCTTCCTCGACGAG
TACGGCCGCGACCTGACGAAGTGGGCGCGCGAGGGCAAGCTCGACCCCGTGATCGGGCGCAGCGAGGAAATCCGCCGCGT
CACGCAGATCCTCACCCGCCGCACCAAGAACAACCCCGTATTGATCGGGGACCCCGGCGTGGGCAAGACCGCGATCGTGG
AAGGGCTGGCCCTGGCCATCCACGAGAAGCGCACGCCGCCCAACCTGCACAACGTGCGGCTGGTCAGCCTGGACCTGAGC
GGCGTGGTCGCGGGCACCAAATACCGCGGCGAGTTCGAGGAACGCCTGCGCCAGATCATCGAGGAGCTGCGCAACGCCAA
GGTGATGGCCTTCATCGACGAGCTGCACACCCTGGTCGGGGCGGGCGGCGCCGAGGGCACGCTGGACGCCGCGAACATCC
TCAAGCCCGCCCTGTCGCGCGGCGAGATCCAGGTGATCGGCGCGACGACCACGGGCGAGTACCACCGCTACATCGAGAAG
GACGCCGCCCTGGAGCGCCGCTTCCAGCCGGTGATCGTGCTGGAGCCCAGCCCCGCCGAGACGCTGCAAATCCTGCGCGG
CCTGCGGCCCAAGTACGAGGAGCACCACGGTGTCCAGATTCCGGACAACGCCCTGGAACTCGCCGTGCGCATCGGCGAGC
GCAGCCTGCCGGGGCGTAACTTCCCCGACAAGGCCATCGACCTCATCGACGAGGCGGCCAGCCGCGTCCGGCTGAACATG
AGCGTGGGCCTGCCCATCGCCGAGAACGAGGACGGCGAGCCGGTCGTGACCCGCGAGGACATGGAGGCCGTCATCAACTC
GATGGGCGGCATCTACAGCGAGGAGACGGCCGCGCAGCTCGGCGACCTCGACCAGAACCTCCAGGATCAGGTGTACGGGC
AGCCCGACGCCATCAAGGCCCTGAGTTCGGCGCTGCGCCGCGCCCGCGTGGGCCTGGGCGGGCGCACCCGCGTCGCCGCG
AGCTTCCTGTTCGTCGGCCCGAGCGGCGTGGGCAAGACCCACCTCGCCAAGGCGCTGGCCCGCAGCCTGTTCGGCAGCGA
GCGCGCGCTGATCCGGGTGGACATGTCCGAGTTCCAGGAGTCGCACAGCGTCTCCAAGCTCATCGGGTCGCCTCCCGGCT
ACGTGGGCTTCGAGCAGGGCGGCCGCCTGACCGAGGCCGTGCGCCGCCAGCCCTTCAGCGTGATCCTGCTCGACGAGATC
GAGAAGGCGCACCCGGACGTGTACAACACCTTCCTCCAGGTGCTCGACGACGGCCGCCTGACCGACGGGCTGGGCCGCAC
GGTGGATTTCCGGCGCACCATCATCATCATGACGAGCAACACCGGCTTCAACGTGAACCCCACGGTGGGCTTCTCGCCGG
TCACGCCCGACAACAACGCGCCGTTGCGGCACATCTTCACGCCCGAATTCCTCGACCGCCTCGACGACGTGATCCGCTTC
AAGTCGCTGGGCGAGGAGGAACTCGTGCGCGTGGCCCAGCAGCTCATGGGCGAGATGCGCGAGGAACTCGCCAGCCGCGA
GCTGAACGTCACCTTCGACCCGGCCATCGCCGCGTGGCTGGTCGGCAAGCTCAAGGCCCGCAGCCCCAAGCACGCGGTCG
GCAGTTCGCGGCAGCTGCGCACGCTGGTCCGGGAGGAGATCGAGGACCCGCTGGCCCTGGAACTCATCGGCAACGGCAGC
GAGGAAGTGCGCGTGGTGCTGGGCGAAAACGGCATCGCCTTCGAAAAGGGCGAGCAGGCCGCGCCCCGTCAGATTCTGGC
GTAG

Protein sequence :
MTNRYDDRARLVFHYAREEGNRLGHAMVGPEHLLLGLMREGGTAAGILGEFGASLDGLRRRVEEIIGRGEGNRLNDAPSI
TPRARRVMELASSEARGLGAQVTSTEHILLGIIREGDGVAFRILQELTKDVDTIRWRILAQGEQGGGKPAKPVATPFLDE
YGRDLTKWAREGKLDPVIGRSEEIRRVTQILTRRTKNNPVLIGDPGVGKTAIVEGLALAIHEKRTPPNLHNVRLVSLDLS
GVVAGTKYRGEFEERLRQIIEELRNAKVMAFIDELHTLVGAGGAEGTLDAANILKPALSRGEIQVIGATTTGEYHRYIEK
DAALERRFQPVIVLEPSPAETLQILRGLRPKYEEHHGVQIPDNALELAVRIGERSLPGRNFPDKAIDLIDEAASRVRLNM
SVGLPIAENEDGEPVVTREDMEAVINSMGGIYSEETAAQLGDLDQNLQDQVYGQPDAIKALSSALRRARVGLGGRTRVAA
SFLFVGPSGVGKTHLAKALARSLFGSERALIRVDMSEFQESHSVSKLIGSPPGYVGFEQGGRLTEAVRRQPFSVILLDEI
EKAHPDVYNTFLQVLDDGRLTDGLGRTVDFRRTIIIMTSNTGFNVNPTVGFSPVTPDNNAPLRHIFTPEFLDRLDDVIRF
KSLGEEELVRVAQQLMGEMREELASRELNVTFDPAIAAWLVGKLKARSPKHAVGSSRQLRTLVREEIEDPLALELIGNGS
EEVRVVLGENGIAFEKGEQAAPRQILA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 4e-117 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpA YP_006260845.1 ATPase AAA-2 VFG0080 Protein 2e-112 47