Gene Information

Name : DGo_CA0101 (DGo_CA0101)
Accession : YP_006259486.1
Strain : Deinococcus gobiensis I-0
Genome accession: NC_017790
Putative virulence/resistance : Virulence
Product : Two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 100367 - 101032 bp
Length : 666 bp
Strand : +
Note : -

DNA sequence :
GTGAGCGAACACCGCATCCTTGTGATCGAGGACGACCTCGATATTGCCAATGTCCTGCGCCTGGACCTGACCGACGCGGG
ATACGCCGTAGATCATGCCGACTCGGCCATGAACGGTCTGATCAAGGCCCGCGAGGACCATCCCGACCTGATCCTGCTGG
ACCTGGGCCTGCCCGACTTCGATGGCGGTGACGTGGTGCAGCGCCTGCGCAAGAACAGCGCCCTGCCCATCATCGTGCTG
ACCGCCCGCGACACCGTCGAGGAGAAGGTCCGGCTGCTGGGCCTGGGGGCCGACGACTACCTCATCAAGCCCTTCCATCC
CGACGAGCTGCTGGCCCGTGTGAAGGTGCAGCTCCGGCAGCGCGCCAGCGAGAGCCTGAGCATGGGCGACCTCACCCTGG
ACCCCCAGAAGCGCCTCGTGACCTACAAGGCCGAGGAACTGCGGCTCTCGCCCAAGGAGTTCGACATCCTGGCGCTGCTC
ATCCGGCAGCCGGGCCGCGTGTACTCGCGCCACGAGATCGGCCAGGAAATCTGGCAGGGCCGCCTCCCCGAGGGCAGCAA
CGTCGTGGACGTGCACATGGCCAACCTGCGGGCCAAGCTGCGCGACCTCGACGGCTACGGCCTGCTGCGTACGGTGCGCG
GCGTGGGCTACGCCCTGCGCGGCTGA

Protein sequence :
MSEHRILVIEDDLDIANVLRLDLTDAGYAVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL
TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRASESLSMGDLTLDPQKRLVTYKAEELRLSPKEFDILALL
IRQPGRVYSRHEIGQEIWQGRLPEGSNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYALRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-28 43
ef0091 AAM75294.1 EF0091 Not tested Not named Protein 5e-25 42
EF0571 NP_814337.1 DNA-binding response regulator Not tested Not named Protein 7e-25 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DGo_CA0101 YP_006259486.1 Two component transcriptional regulator, winged helix family BAC0125 Protein 2e-27 42
DGo_CA0101 YP_006259486.1 Two component transcriptional regulator, winged helix family BAC0197 Protein 5e-30 42
DGo_CA0101 YP_006259486.1 Two component transcriptional regulator, winged helix family BAC0347 Protein 3e-25 41
DGo_CA0101 YP_006259486.1 Two component transcriptional regulator, winged helix family BAC0111 Protein 2e-25 41
DGo_CA0101 YP_006259486.1 Two component transcriptional regulator, winged helix family AE000516.2.gene3505. Protein 3e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DGo_CA0101 YP_006259486.1 Two component transcriptional regulator, winged helix family VFG1390 Protein 3e-28 43
DGo_CA0101 YP_006259486.1 Two component transcriptional regulator, winged helix family VFG0596 Protein 2e-28 43
DGo_CA0101 YP_006259486.1 Two component transcriptional regulator, winged helix family VFG1389 Protein 2e-24 41