Gene Information

Name : Solca_0327 (Solca_0327)
Accession : YP_006254646.1
Strain : Solitalea canadensis DSM 3403
Genome accession: NC_017770
Putative virulence/resistance : Virulence
Product : putative nucleoside-diphosphate sugar epimerase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 413139 - 415124 bp
Length : 1986 bp
Strand : -
Note : PFAM: Polysaccharide biosynthesis protein

DNA sequence :
ATGTTTACGCTCTCTCCTTCTCCTCAAAGAGTAAAAAAAGAAGCTTTTTTTACTCTTAGAATCTCGTCTTCGCGCTTTAT
ACCGCGGTGGCTGGTATTTAGTATTGATACCATCATCAGTACAATTGCCTTTGTTTGTGCATTTATAATGTTTTATGACT
TTAACATACATGCATTATTTGCCCACAAAGGATTAGAAACGCTCGTTTATATTAATCTACTTATTTCGATTGCGGTATCG
TTAACATTTAAAACATACGCCGGTATTATCAGATTAACCAGTTTGCAGGATATGGCCCGAATTTTCAACGCCATATTTTT
TAATGCGGTTTTGTTAGGTGTGGTTAAACTCGGACTCAGTAATATTGAATCGATTATCATCTTGCCCCTCAATGTTATAT
TAAAATACTTTTTGATTCTTTTCTTCTTTTCTACTTCCTACCGATTTTTAATAAAACTTGGTTTTGAGTCAATACGAAGA
GAAAATACCTTAAAGAAATCCATTTTAATTTTTGGTGCCGGCGAATCTGGCATGATTACTAAACATGTAATAAATCACGA
AGCTCAATGTGGATTAAAGGTGATAGGATTTCTGGATGATAACCTAAATAAAGTAGGTAAATACATTGATGGTATTAAAA
TTTATAATGCCAGAACTGACATTCAATTTCTTGTAGATAAGTATAAAGTTGAAGAAGTTATTATCAGTATCCAAAATCTT
GATATTAACAGGAAAAGAGAACTTGTTGATATATGTTTATTACATGAAATTAAAGTGGTTACGATACCTCGTGCTTCAAA
TTGGATCGACGGTAGTTTTAATCTTAATCAACTTCGGAATATTAAAATTGAAGAACTTCTTGAACGAGAAGTTATTACTA
TACAAAATGCCAAGGTTACAGATGAGCTCCGCAATAAAAGGATTTTGGTTACGGGGGCAGCTGGTTCTATTGGAAGTGAA
GTGGTTAGACAGGTACTCAAATTTAACCCTGAACTACTTGTTTTATGTGATCAGGCCGAAACTGCTCTTTATAATATTGA
ATTAGAATTCAAAGAATCGTTCCCTAACGCTTGTATTCAGCCGTTTATTGCCGATATCCGAAATAAGGAACGTATGGAGT
ATCTTTTCGATAAATACAAACCAGAGATTGTTTTCCATGCTGCTGCTTATAAACATGTTCCGATGATGGAACATCATCCT
TCAGAAGCCATCTTAACCAATGTTGGTGGAACCAAAAATGTTGCGGATTTATCAGTTAAATACCAGGTTGAAAAATTTGT
GATGATTTCAACCGACAAAGCTGTAAATCCAACAAATGTAATGGGCGCCTCAAAAAGAATAGCTGAAATTTATACGCAGT
CATTGAATGACTATTATGTACAAAACGGAATTGAATCATCTACACGTTTTATTACCACCCGTTTTGGTAACGTATTAGGC
TCTAATGGTTCTGTAATTCCGCGCTTTAAGGAACAAATTGAAAAAGGCGGACCAATTACCGTTACCCACCCCGACATCAA
CAGGTATTTCATGACAATTCCTGAAGCCTGTCAGTTGGTTATTGAAGCCGGAACAATGGGAAATGGCGGAGAGATATTTG
TTTTCGACATGGGCAAATCCGTTAAGATTGTTGATTTAGCGAAAAAGATGATCCAGCTTTCTGGTTTAACCCCTGATAAG
GACATACAAATTGTTTTCACGGGATTACGTCCGGGAGAAAAGCTGTATGAAGAGTTATTAAATGACTCCGAATGCGTCCA
AAAAACTCACCATGAGAAAATTAAAATTGCTCGGGTTCGAAAATATAAATATGAATGGGTAGAAGAATCCATCAACGAAC
TGTTAAGCTCAGCAACTAATTTTCAGGAAAAATCGATTGTTCGTCAGATGAAATTGATTGTTCCTGAATTTAAAAGTAAA
CAATCCGTTTACGAAGAATTAGATGCTCCCCATTTGTCATTAGAACAAGCAAATATTGCTGTTTAA

Protein sequence :
MFTLSPSPQRVKKEAFFTLRISSSRFIPRWLVFSIDTIISTIAFVCAFIMFYDFNIHALFAHKGLETLVYINLLISIAVS
LTFKTYAGIIRLTSLQDMARIFNAIFFNAVLLGVVKLGLSNIESIIILPLNVILKYFLILFFFSTSYRFLIKLGFESIRR
ENTLKKSILIFGAGESGMITKHVINHEAQCGLKVIGFLDDNLNKVGKYIDGIKIYNARTDIQFLVDKYKVEEVIISIQNL
DINRKRELVDICLLHEIKVVTIPRASNWIDGSFNLNQLRNIKIEELLEREVITIQNAKVTDELRNKRILVTGAAGSIGSE
VVRQVLKFNPELLVLCDQAETALYNIELEFKESFPNACIQPFIADIRNKERMEYLFDKYKPEIVFHAAAYKHVPMMEHHP
SEAILTNVGGTKNVADLSVKYQVEKFVMISTDKAVNPTNVMGASKRIAEIYTQSLNDYYVQNGIESSTRFITTRFGNVLG
SNGSVIPRFKEQIEKGGPITVTHPDINRYFMTIPEACQLVIEAGTMGNGGEIFVFDMGKSVKIVDLAKKMIQLSGLTPDK
DIQIVFTGLRPGEKLYEELLNDSECVQKTHHEKIKIARVRKYKYEWVEESINELLSSATNFQEKSIVRQMKLIVPEFKSK
QSVYEELDAPHLSLEQANIAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 4e-81 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Solca_0327 YP_006254646.1 putative nucleoside-diphosphate sugar epimerase VFG1300 Protein 3e-81 41