Gene Information

Name : Solca_0256 (Solca_0256)
Accession : YP_006254576.1
Strain : Solitalea canadensis DSM 3403
Genome accession: NC_017770
Putative virulence/resistance : Virulence
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 312721 - 313398 bp
Length : 678 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
ATGATAAAAATATCCAATCTGGAAAAAATCTACAGAACAGAAGATGTTGAAACTGTAGCATTGAATAAAGTATCCTTTGA
TATAAAAGAAGGAGAGTTTGTGGCCATAATGGGACCTTCTGGATGTGGTAAATCCACACTGTTGAATATCCTTGGTTTGT
TAGATGACTTAGATGCCGGAAGTTTTGTTTTTGCAGGACAAGAGGTGGCTAAATACAACGAACGCAAACGTGCTGATTTA
CGCAAAAAACATATTGGTTTTGTATTCCAGAGCTTCAACCTGATTGACGAATTAACCGTGTATGAAAATGTGGAATTACC
ACTGCTTTATTTGAAAGTTGGCACAGAAGAACGTAAAAAACGTGTGGAAGAAGTGTTGGAAAAGATGCAGATCATGCACC
GTAAAAATCACTTTCCTCAGCAATTGTCGGGTGGTCAGCAGCAACGTGTAGCAGTAGCTCGCGCAGTGGTAAACCGTCCT
AAATTAATTCTTGCCGATGAGCCTACAGGTAACCTCGACTCAAGCAACGGTAATGAAGTAATGCAAATGCTTACCGAACT
AAACGATGCCGGTACAACCGTAATTATGGTAACTCACTCAGAGCACGATGCACGCTACAGTCACCGCATTGTACGCATGC
TCGACGGACAAGTAGTGCTTGAAAATGTAATGATATAG

Protein sequence : 
MIKISNLEKIYRTEDVETVALNKVSFDIKEGEFVAIMGPSGCGKSTLLNILGLLDDLDAGSFVFAGQEVAKYNERKRADL
RKKHIGFVFQSFNLIDELTVYENVELPLLYLKVGTEERKKRVEEVLEKMQIMHRKNHFPQQLSGGQQQRVAVARAVVNRP
KLILADEPTGNLDSSNGNEVMQMLTELNDAGTTVIMVTHSEHDARYSHRIVRMLDGQVVLENVMI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 2e-20 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-22 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Solca_0256 YP_006254576.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 4e-36 50
Solca_0256 YP_006254576.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 3e-31 48
Solca_0256 YP_006254576.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7685735. Protein 3e-26 44
Solca_0256 YP_006254576.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 3e-24 43
Solca_0256 YP_006254576.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686946. Protein 3e-16 43
Solca_0256 YP_006254576.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene598.p Protein 2e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Solca_0256 YP_006254576.1 antimicrobial peptide ABC transporter ATPase VFG2059 Protein 8e-12 41