Gene Information

Name : SHJG_0223 (SHJG_0223)
Accession : YP_006241376.1
Strain : Streptomyces hygroscopicus 5008
Genome accession: NC_017765
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 295385 - 296278 bp
Length : 894 bp
Strand : -
Note : -

DNA sequence :
GTGTTCGGAGTCGAGCCGATCTGCAAAGTCCTGACCAGCCACGGACTGAAGATCGCGACGAGCACCTACTACGCCGCCAA
GGACCGCACCCCCAGCCCGCGGTCAGTCCGCGACGCGGAGCTGAAGACCCAGATCAGCCGCGTCCACGCCGACAACTTCG
GTGTCTACGGAGTGCGGAAGGTCTGGCGGCAGCTGCACCACGAGGGCATACCCGTGGCCCGCTGCACGGTCGCCCGGCTG
ATGAGTGACCTTGGTCTTGAGGGTGCCCGACGCGGGAAGAAGATCCGTACCACCATCCGCGACGATGGCCATGAGCGGGC
CTCTGACCTGCTCAGACGCGACTTCACCGCATCCCGTCCGAACGAGCGGTGGGTCGCCGACTTCACCTATGTCGCCACCT
GGTCCGGCATCGTCTACGTCGCCTTCGTCGTGGACGTGTTCTCCCGGGCGATCGTCGGCTGGTCGACCGTCACCAGCAAG
CGGGCCAAGCTCGTCCTCGACGCCCTCGACATGGCCCTGTGGCGCCGCGACCGGGCTGGCATTCCCGCAGGTCCCGGGCT
CGTGCATCACTCGGACGCGGGCAGTCAATACACGTCTTTCGCGTTCACCGCTCACCTGCTCGAGGCCGGCATCGACGCCT
CGATCGGCACCGTCGGCGACGCCCTGGACAACGCGCTCATGGAGTCCCAGATCGGCCTCTACAAGACGGAGCTGATCAAG
CCCCGCAGGCCCTGGCACGGCCTGGCCGACGTCGAGCTCGGCACCGCGGAATGGGCCGACTGGTTCAACAACCAGCGCCT
CCATACCGCCATCGGAGACATCCCGCCCCACGAACACGAGACCAACCACTACGCTCAACACCAGCCCCAACCGGCGGCTG
GAGTCAACACATAG

Protein sequence :
MFGVEPICKVLTSHGLKIATSTYYAAKDRTPSPRSVRDAELKTQISRVHADNFGVYGVRKVWRQLHHEGIPVARCTVARL
MSDLGLEGARRGKKIRTTIRDDGHERASDLLRRDFTASRPNERWVADFTYVATWSGIVYVAFVVDVFSRAIVGWSTVTSK
RAKLVLDALDMALWRRDRAGIPAGPGLVHHSDAGSQYTSFAFTAHLLEAGIDASIGTVGDALDNALMESQIGLYKTELIK
PRRPWHGLADVELGTAEWADWFNNQRLHTAIGDIPPHEHETNHYAQHQPQPAAGVNT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 3e-58 55
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-48 54
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-48 53
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-46 53
Z1198 NP_286733.1 transposase Not tested TAI Protein 7e-63 52
Z1638 NP_287141.1 transposase Not tested TAI Protein 7e-63 52
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 4e-62 52
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-63 52
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-63 52
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-62 52
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-63 52
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-63 52
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-63 52
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-63 52
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-63 52
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 5e-62 51
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 5e-62 51
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 5e-62 51
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 7e-63 51
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-62 51
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 3e-59 50
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 4e-51 47
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 5e-36 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SHJG_0223 YP_006241376.1 transposase VFG1602 Protein 1e-59 50