|
Name : NT08PM_0490 (NT08PM_0490) Accession : YP_006239392.1 Strain : Pasteurella multocida 3480 Genome accession: NC_017764 Putative virulence/resistance : Virulence Product : protein PhyA Function : - COG functional category : - COG ID : - EC number : - Position : 499737 - 501794 bp Length : 2058 bp Strand : + Note : PhyA DNA sequence : ATGTATCAAGAGTTTCTTATTTTTTCTAAAGGGATGTTAAAAATTCCTTATTTAAGCGGTTTTTTTACCCAACGCTTGAA AATGTTCTCTCCATTTGTCACATGGAAAAAGGAGAGAACATGTATTTTAGAATGGGGATATAAAGCATCATCAAAGAAGG CGAGGCATTTTGCACAACAACATGATTTACCTTATGCGACGATAGAAGATGGTTTTTTACGTTCTATTGGACTGGGTGTG GATGGGTATCCACCTTTCTCATTAGTGTACGATGATATTGGTATTTATTATGATATCAATCAGCCTTCTCGTTTAGAAAA CTTAATTCTTTCTCAAGATGTATTACTTCAGGAAAAAGTCGATCAAGTTGAGTATGCAATTGAATTAATTTGTACACATA ACCTTTCCAAATATAACCACGCTATTGATACACCTTTACAGAATACGAAGAGGCCGATTGTCTTAGTCGTTGATCAAACA TATGGCGATATGGCAGTTACTTTCGGGAATGCCGAGCAGAGTGATTTTCTACATATGTTAGAACGTGCGATTATTGAAAA TCCAACAGCAGAAATCTGGTTAAAAACCCATCCTGATGTAATGTGTGGTAAAAAACAAGGCTATTTAACGGAATATCAGC AATTTCCAAGAGTAAAAGTATTATCAGAAGATTTTAATTCTATCTCACTACTAAAGCATGTTGATAAAGTTTATTGCGTG ACATCTCACACTGGGTTTGAGGCCCTTTTGTTAGGAAAAACTGTCGTGACTTTTGGGGCTGCCTGGTTTTCTGGTTGGGG ATTGACGGATGATCGGCATGCGTATATTCGTCAGCTAAAACAGAGTAAGAGAAGAGCGAAGCGTTCATTGTTGCAGTTAT TCTATGCTGCTTATTTCCAATATTGTCGTTATATTAATCCTAATACGGGTAAATCAGGCACATTGTTTGATGTCATTGAT TATCTGATTCAAGCAAAAAAAGTAACCAATCAGTTAGCTGGTGATATTTATTGTGTGGGTATGCGCTTTTGGAAACGTAA AGTGGTTCAACCCTTTTTTCAATTTCCACGCTGTCGTTTACATTTTGTGCTGAATGTGCATGAGCTAAAGCGATGTATTC ACGAGAAATCTCAGGCTAAAATAGTGGTGTGGGGACATTCACACATTGAAGTGGTTGAATATGCCAAGCAACAGCAACTT CCTCTTTTGAGAATGGAAGATGGTTTTTTACGTTCAGTTGGGTTAGGGTCTAATTTAACGCCACCGATATCATTAGTTTT AGATGACGTTGGTATTTATTTTGACGCCCAATCTCGTTCCCGATTAGAGGATATTCTACAGCATCAATCCTTTACTCTAA AGGATTTACAGCGCGCAGAAACGTTAAAGAAAACACTGATTGAGCAACATATTGGTAAATATAATGTGGGACATACACAC TTATGCCTAACACACATCAGACAAAATAAACTTTTAGTTGTGGGACAAGTGGAAAATGATGCTTCAATTCAATATGGTTC ACCGCATATTCGTACGAATGCAGAGTTATTATGTACGGTCAGAAAAAATAATCCCCAAGCCTATATTATTTATAAACCTC ATCCTGATGTGGTTGCAGGCAATCGTAAAAACACAGATCATCTAGATGATTATCGACAGTATGCTGATTTCGTGGTTGAG AAAGCCAATATATTGGATTGCATTAACCAAGTGGATGAAGTGCATACGATGACCTCTTTAGCGGGGTTTGAAGCGTTACT GCGCGAGAAAAAAGTACATTGTTATGGCTTGCCTTTTTATTCTAACTGGGGGCTAACAGTGGATCATCTTTCTCTAAACC GAAGAAGTCGGAAGTTAAGTCTTTTAGAATTAATTGCTGGCGTGCTGATTTATTACCCACAATATATTGACCCAAAAACA AAAACAATGATCGATGTGCAGCGAGCGGTTGATATTCTGATCGAGCAACGTCGAAAAATAAAAAATAATAAATTACATAC AAATTATTTTATGAATATTTTTATGAAATTAAAAAATGTTTATTCTGTTTTGAGGTAG Protein sequence : MYQEFLIFSKGMLKIPYLSGFFTQRLKMFSPFVTWKKERTCILEWGYKASSKKARHFAQQHDLPYATIEDGFLRSIGLGV DGYPPFSLVYDDIGIYYDINQPSRLENLILSQDVLLQEKVDQVEYAIELICTHNLSKYNHAIDTPLQNTKRPIVLVVDQT YGDMAVTFGNAEQSDFLHMLERAIIENPTAEIWLKTHPDVMCGKKQGYLTEYQQFPRVKVLSEDFNSISLLKHVDKVYCV TSHTGFEALLLGKTVVTFGAAWFSGWGLTDDRHAYIRQLKQSKRRAKRSLLQLFYAAYFQYCRYINPNTGKSGTLFDVID YLIQAKKVTNQLAGDIYCVGMRFWKRKVVQPFFQFPRCRLHFVLNVHELKRCIHEKSQAKIVVWGHSHIEVVEYAKQQQL PLLRMEDGFLRSVGLGSNLTPPISLVLDDVGIYFDAQSRSRLEDILQHQSFTLKDLQRAETLKKTLIEQHIGKYNVGHTH LCLTHIRQNKLLVVGQVENDASIQYGSPHIRTNAELLCTVRKNNPQAYIIYKPHPDVVAGNRKNTDHLDDYRQYADFVVE KANILDCINQVDEVHTMTSLAGFEALLREKKVHCYGLPFYSNWGLTVDHLSLNRRSRKLSLLELIAGVLIYYPQYIDPKT KTMIDVQRAVDILIEQRRKIKNNKLHTNYFMNIFMKLKNVYSVLR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 2e-178 | 56 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 9e-126 | 47 |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 1e-125 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| NT08PM_0490 | YP_006239392.1 | protein PhyA | VFG0704 | Protein | 1e-155 | 56 |
| NT08PM_0490 | YP_006239392.1 | protein PhyA | VFG0259 | Protein | 7e-179 | 56 |
| NT08PM_0490 | YP_006239392.1 | protein PhyA | VFG0692 | Protein | 5e-178 | 55 |
