Gene Information

Name : NT08PM_0485 (NT08PM_0485)
Accession : YP_006239387.1
Strain : Pasteurella multocida 3480
Genome accession: NC_017764
Putative virulence/resistance : Virulence
Product : protein HexD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 490688 - 491869 bp
Length : 1182 bp
Strand : -
Note : HexD

DNA sequence : 
ATGAAACCAATAAAAACATTATCTATTTCTTTTATCACAACGCTCATCCTCGCTGGCTGTCATAGCATGCCAACTTCGGG
ACCCGCTCAAAATCATATTATTGGGTTAAAAAAACCACAAAATGAGAGCTTGCCAAGTGTTGATGTGATTGAAATGAATG
ATAAAGTAGCACACACTTTGTTTAAACAAAAGCAATCGCAATCCTTTACTCAATTCAAACAGCAAAATAGTAACTATGCA
GATATCATTAATGTTGGCGATACATTAGATGTGTTGATTTGGGAAGCCGCACCCGCTATTTTATTCGGCAGTGTTCTGTC
ACAAACTGGTAGTGGCGGTGCAAATCTCACGACATTACCCGAACAAATTGTTGCACGCAATGGAAAAATCACGATCCCAT
TTTTAGGCCCTATCTTAGTAAAAGGCAAAACACCAGAGCAAATTCAAAGAGATATTGCTCATGCTTTATCCTCTTTAGCG
AATAAACCTCAGGTGATTGTTCGTTTAAATAAAAATAACTCAAAAAATGTCACCATTCTCCGCCAAGGCAATAGTGTCAG
AATGCCATTAACATCACAAGGTGAACGTGTACTTGATGCTATTGCCGCAGTGGGCGGTGCCACAGAAAATCTACAAGATA
TTTCCGTTCAGCTTACACGTGGTAAAGAAGTAAAAATGCTTTCCTTAGAAAAATTAGCCACTCATCCTGAAGAAAACATT
CTGCTACGTTCAAATGATGTCGTTACATTATTGAATAAACCTCTTAGTTTCACAGGATTAGGTGCACTCGGGACGAATAA
ACAGGTGAAATTCTCTGCGAATGGCTTAACACTCGCAGAAGGCATCGGAGAAATGGGTGGACTATTAGATAACCGTGCTG
ATCCTAAAGGGGTTTTTGTCTTCCGTTATATTCCATTTAATAAATTATCTCTCGCAGAACAAACTAAATGGAAAGCTCGT
GGCTATGATAACGACATGGAGATTCCAACAGTTTATAGTGTCAATCTACTTAATCCAAACGCGTTGTTTTGGTTACAACG
TTTCCCTATTCAAGATAAAGATTTAGTTTATGTATCAAATGCACCAATGGCAGAATTCCAAAAATTCTTAAAATTAGTGT
TTTCTATCACCTCTCCTGTTACGGGTACACTTCATAATATTAATGTAATTAAAAATTTATAA

Protein sequence : 
MKPIKTLSISFITTLILAGCHSMPTSGPAQNHIIGLKKPQNESLPSVDVIEMNDKVAHTLFKQKQSQSFTQFKQQNSNYA
DIINVGDTLDVLIWEAAPAILFGSVLSQTGSGGANLTTLPEQIVARNGKITIPFLGPILVKGKTPEQIQRDIAHALSSLA
NKPQVIVRLNKNNSKNVTILRQGNSVRMPLTSQGERVLDAIAAVGGATENLQDISVQLTRGKEVKMLSLEKLATHPEENI
LLRSNDVVTLLNKPLSFTGLGALGTNKQVKFSANGLTLAEGIGEMGGLLDNRADPKGVFVFRYIPFNKLSLAEQTKWKAR
GYDNDMEIPTVYSVNLLNPNALFWLQRFPIQDKDLVYVSNAPMAEFQKFLKLVFSITSPVTGTLHNINVIKNL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrA NP_273135.1 capsule polysaccharide export outer membrane protein Not tested IHT-A Protein 9e-90 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT08PM_0485 YP_006239387.1 protein HexD VFG0699 Protein 8e-107 53
NT08PM_0485 YP_006239387.1 protein HexD VFG0687 Protein 8e-107 53
NT08PM_0485 YP_006239387.1 protein HexD VFG0255 Protein 4e-90 51
NT08PM_0485 YP_006239387.1 protein HexD VFG2566 Protein 2e-70 41