Gene Information

Name : NT08PM_0482 (NT08PM_0482)
Accession : YP_006239384.1
Strain : Pasteurella multocida 3480
Genome accession: NC_017764
Putative virulence/resistance : Virulence
Product : capsule polysaccharide export ATP-binding protein CtrD
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.38
Position : 488089 - 488748 bp
Length : 660 bp
Strand : -
Note : -

DNA sequence : 
ATGATTTATGTAGAAAACGTCTGTAAAAAATACCTTAATCGTACGGGGTGGCATACCGTATTAGACGATGTGAGTTTCTC
ACTTAGAAAAGGGCAAAAAGTCGGTATCCTCGGAAAAAATGGGGCAGGGAAATCAACCCTTATCCGTTTACTCAGTGGTG
TGGAACCACCTACATCAGGAAAAATTACACGTAAAATGAGCATATCTTGGCCATTAGGCTTCAGTGGTGCATTCCAAGGT
AGCTTAACGGGTATGGATAATTTACGTTTTATTGCGAGGATCTATAATGCAGATATCGATTATGTAAAGCGTTTTACTGA
AGAGTTCTCTGAGCTAGGTAAATACTTATATGAGCCAGTACGGACCTATTCATCAGGGATGAAAGCTCGCTTAGCTTTCG
CTTTATCACTTTCTATCGAATTTGATTGTTATCTGATTGATGAAATTATTGCAGTTGGTGATGCACGCTTTGCTGATAAG
TGTAAATATGAGTTATTTGAGAAAAGAAAAGATCGTTCATTGATCTTAGTTTCTCATAGCCCGAATGCAATTCGAGAATA
TTGTGATAATGCGATGGTTCTCCATAATGGCATTATGCATCATTTCAATTCCATTGATATTGCATATCAATTTCATAATA
ATGCATTACAAACCAAATAA

Protein sequence : 
MIYVENVCKKYLNRTGWHTVLDDVSFSLRKGQKVGILGKNGAGKSTLIRLLSGVEPPTSGKITRKMSISWPLGFSGAFQG
SLTGMDNLRFIARIYNADIDYVKRFTEEFSELGKYLYEPVRTYSSGMKARLAFALSLSIEFDCYLIDEIIAVGDARFADK
CKYELFEKRKDRSLILVSHSPNAIREYCDNAMVLHNGIMHHFNSIDIAYQFHNNALQTK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 5e-81 77
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 5e-46 50
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 8e-45 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT08PM_0482 YP_006239384.1 capsule polysaccharide export ATP-binding protein CtrD VFG0696 Protein 4e-83 77
NT08PM_0482 YP_006239384.1 capsule polysaccharide export ATP-binding protein CtrD VFG0258 Protein 2e-81 77
NT08PM_0482 YP_006239384.1 capsule polysaccharide export ATP-binding protein CtrD VFG2563 Protein 2e-59 57
NT08PM_0482 YP_006239384.1 capsule polysaccharide export ATP-binding protein CtrD VFG1449 Protein 2e-46 50