Gene Information

Name : NT08PM_2041 (NT08PM_2041)
Accession : YP_006240901.1
Strain : Pasteurella multocida 3480
Genome accession: NC_017764
Putative virulence/resistance : Virulence
Product : chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2118887 - 2121454 bp
Length : 2568 bp
Strand : +
Note : -

DNA sequence :
ATGAATATCGAAAAATTTACGACAAAATTTCAACAAGCGCTGCAAGAGGCGCAATCTTTAGCCATTGGCAAAGATAACCA
ATTTATTGAACCCATCCATTTACTCACCGCCTTGTTAAATCAACAAGGTGGTTCCACTGCGCCAATTTTAACGGCAAGTG
GGGCAAACTTACCGCTCTTGCGTAATGAATTAAATGCCGAGCTCAGTAAATTACCACAAGTGTCAGGCAGCGGTGGTGAT
GTACAAGTTTCACGGAGTTTAGTGAATCTATTAAACTTGTGCGACAAGTTAGCACAGCAACGCCAAGATAAATTTATTTC
CTCTGAATTGTTTTTACTGGCAGCGTTAGAAGACAAAACACTTGGTGATGTGTTGAAAAAGTGCGGTGTGAAAAAAGAAA
ATTTACAACAGGCAATAGAGAAAGTCCGTGGCGGACAAAATGTAAATGATCCAAATGCGGAAGAAAGTCGCCAAGCGTTA
GAAAAATATACGATTGATTTAACGGCGCGTGCAGAAAGCGGCAAACTTGACCCCGTGATTGGGCGTGATGAAGAAATTCG
TCGTGCCATTCAAGTATTACAACGCCGTACCAAAAACAACCCAGTGTTAATCGGTGAACCGGGCGTGGGGAAAACTGCGA
TTGTAGAAGGGCTGGCGCAACGCATTGTTAATGGTGAAGTACCCGAAGGCTTGAAAAATAAGCGCGTTCTGTCTTTAGAT
ATGGGGGCATTGATTGCTGGTGCAAAATACCGTGGTGAATTTGAAGAACGTTTAAAAGCGGTGTTAAATGAACTGTCAAA
AGAAGAAGGACGCGTGATTCTCTTTATTGATGAAATTCACACCATGGTGGGGGCAGGGAAAACCGATGGCGCGATGGATG
CCGGTAACTTGCTCAAACCAAGCTTAGCCCGTGGGGAATTACACTGCGTGGGGGCAACAACGCTAGATGAATATCGTCAA
TACATAGAGAAAGATGCCGCCCTTGAGCGTCGTTTCCAAAAAGTGTTTGTTGGTGAGCCAACGGTGGAAGATACCATTGC
GATCTTACGTGGGTTAAAAGAACGTTACGAAATCCACCACCATGTTCAAATTACTGACCCTGCGATTGTGGCGGCAGCGA
CCCTTTCTCATCGTTATGTATCTGATCGTCAGCTACCTGATAAAGCGATTGATTTAATTGATGAAGCAGCATCGAGCATT
CGTATGGAAATTGACTCTAAACCTCAGCCGTTAGATCGTTTAGAGCGCCGTATCATTCAATTAAAATTGGAGCAACAAGC
GCTACAAAAAGAAGATGATGATGCGAGTCGTAAACGTTTAGCAATGCTTGAAAAAGAATTAGGTGAAAAAGAACGTGAAT
ATGCGGAGTTAGAAGATGTTTGGAAAGCTGAAAAAGCCGCCCTTTCAGGTACACAGCATATTAAAGCGGAGCTAGACAGT
GCCAAAACACAAATGGAACAAGCGCGCCGTGCCAGTGACTTCGCAAAAATGTCGGAATTACAATACGGTGTGATCCCTGC
GCTAGAAAAACAACTAGCGCAAGCAGAATCCGCTGAAGGCAAAGAAATGACCCTGCTCCGCTACCGTGTGACCGATGAGG
AAATTGCCGAAGTGCTTTCGCGCGCAACTGGTATTCCTGTGGCGAAGATGATGGAAGGGGAAAAAGAAAAACTCTTACGT
ATGGAAGAAGAATTGCACAAACGAGTGATTGGTCAACATGAAGCCATTGAAGCAGTATCGAATGCAATTCGCCGTAGCCG
TGCTGGGTTATCCGATCCAAATCGTCCAATTGGATCGTTCTTGTTCTTAGGTCCAACCGGAGTCGGGAAAACAGAACTTT
GTAAAACCCTTGCCAATTTCCTGTTTGATGACGAAAACGCGATGGTGCGTATTGATATGTCAGAATTTATGGAAAAACAC
AGTGTTTCACGCTTAGTGGGCGCCCCTCCAGGTTATGTGGGTTACGAAGAAGGAGGCTATTTAACCGAAGCCGTTCGTCG
TCGCCCTTATTCCGTGATCTTGCTTGATGAAGTGGAAAAAGCACACCATGATGTGTTTAACATTTTATTACAAGTGTTAG
ATGATGGACGCTTAACCGATGGACAAGGGCGCACCGTGGATTTCCGCAATACTGTGGTAATCATGACATCTAACTTAGGC
TCACACTTGATCCAAGAAAACAGTACATTGGATTACCCAAGTATGAAAGAGTTAGTGATGTCTGTGGTGGGACAACATTT
CCGCCCAGAATTTATCAACCGTATTGATGAAACCGTCGTCTTCCACCCATTAGGTAAAGAAAACATTCGTGAGATTGCGA
CAATCCAACTTGCTCGCTTAATCAAACGTATGGAAAGCCATGGTTATCAATTACACTTCACCGATGCTTGCTTAGACTTT
ATTGGCGAGGTAGGTTACGATCCGGTGTATGGCGCACGTCCGTTAAAACGTGCGATTCAACAAGAAATTGAGAACCCGTT
GGCACAACAAATTCTGTCAGGCAAATTATTACCGAATCAATTAGTCACCATTGACTATGTTGACGGAAAAGTGATTGCCA
ATCAGTAA

Protein sequence :
MNIEKFTTKFQQALQEAQSLAIGKDNQFIEPIHLLTALLNQQGGSTAPILTASGANLPLLRNELNAELSKLPQVSGSGGD
VQVSRSLVNLLNLCDKLAQQRQDKFISSELFLLAALEDKTLGDVLKKCGVKKENLQQAIEKVRGGQNVNDPNAEESRQAL
EKYTIDLTARAESGKLDPVIGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSLD
MGALIAGAKYRGEFEERLKAVLNELSKEEGRVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQ
YIEKDAALERRFQKVFVGEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYVSDRQLPDKAIDLIDEAASSI
RMEIDSKPQPLDRLERRIIQLKLEQQALQKEDDDASRKRLAMLEKELGEKEREYAELEDVWKAEKAALSGTQHIKAELDS
AKTQMEQARRASDFAKMSELQYGVIPALEKQLAQAESAEGKEMTLLRYRVTDEEIAEVLSRATGIPVAKMMEGEKEKLLR
MEEELHKRVIGQHEAIEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDDENAMVRIDMSEFMEKH
SVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHHDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLG
SHLIQENSTLDYPSMKELVMSVVGQHFRPEFINRIDETVVFHPLGKENIREIATIQLARLIKRMESHGYQLHFTDACLDF
IGEVGYDPVYGARPLKRAIQQEIENPLAQQILSGKLLPNQLVTIDYVDGKVIANQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 2e-154 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT08PM_2041 YP_006240901.1 chaperone ClpB VFG2076 Protein 2e-103 41