Gene Information

Name : HCN_0963 (HCN_0963)
Accession : YP_006235312.1
Strain : Helicobacter cinaedi PAGU611
Genome accession: NC_017761
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 983867 - 984646 bp
Length : 780 bp
Strand : -
Note : -

DNA sequence : 
ATGGAATCTCGTAATTTTATTGTCCTAAAAAATATTCATAAGACTTATGGCAAGGGAGAGAGTGCGTTTGAAGCATTAAA
GGGCGTGAGTTTGCAGATAGATAAGGGGGAGTTTGTCGCCCTTATGGGTCCTAGTGGATCGGGTAAATCAAGCCTTGCCA
ATATTCTAGGCACACTTGATGTGGGGAGTAGTGGAGAATATCACTTTGGGGATATAGATGTGTTTAGCTTATCTCACAAT
GAACGCGCCTTGCTCCGCCGCAATTATATAGGCTTTATTTTTCAAGGATTTAATCTCCTGCCCCGCACAACGGCACTTGA
AAATGTGGAGCTACCCTTGATGTATCGTGGGGTGAAAAAGGCAGTGCGTGAAGAGATAGCCTTGAAAGCGCTTGATAAAG
TAGGGCTTAGAGAATGGGCAGAGCATACAAGTGCCAAGCTAAGTGGCGGACAGCAGCAAAGAGTGGCTATCGCTAGGGCG
ATCGCACAGGAACCACTTTTTTTACTTGCCGATGAACCAACGGGGAATCTTGATACCAAAAGAAGTGTGGAGATAATGGA
GATTCTAAAGAGCTTAAATCAAAGTTTAGGCATTACGATTCTTATGGTAACGCACGAGCCGGATATGGCGAGATATGCCA
AGAGAGAATTGCATTTTTTAGATGGTAAGTTGGTGGCTGATTCACAAAGCGATACTTTAAACGCTCAAAAGGCTGAATCT
TTAAGGGCGGATTCTATAACTACTGATACTTTAGAGATGGATTCTAAGGGGGATTTATGA

Protein sequence : 
MESRNFIVLKNIHKTYGKGESAFEALKGVSLQIDKGEFVALMGPSGSGKSSLANILGTLDVGSSGEYHFGDIDVFSLSHN
ERALLRRNYIGFIFQGFNLLPRTTALENVELPLMYRGVKKAVREEIALKALDKVGLREWAEHTSAKLSGGQQQRVAIARA
IAQEPLFLLADEPTGNLDTKRSVEIMEILKSLNQSLGITILMVTHEPDMARYAKRELHFLDGKLVADSQSDTLNAQKAES
LRADSITTDTLEMDSKGDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-27 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-22 41
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 4e-20 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCN_0963 YP_006235312.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-44 51
HCN_0963 YP_006235312.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 6e-38 51
HCN_0963 YP_006235312.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 6e-31 45
HCN_0963 YP_006235312.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 1e-28 43