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Name : lysS (HCN_0860) Accession : YP_006235225.1 Strain : Helicobacter cinaedi PAGU611 Genome accession: NC_017761 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : - Position : 866635 - 868215 bp Length : 1581 bp Strand : - Note : - DNA sequence : ATGTTTTCTAATTTTTACATACAGCAACGCATTAAAAAAATGCAACTTATGCGTGAGGAGGGCTTGAATCCTTATGCGAA TGACACAAAACGCACCATAAGCAATAATGACTTTTTACAAAAATATGCTTTTCTAAAATCCCAAGAGCAAGGGGCAGAGA GTGCAGATTCTAGCTCAACAAAATCTCAACCCATAGAATCTATTGTGGGGCGAGTGCGATTTATCCGTCTTATGGGCAAG GCGTGTTTTGTGAAGATTCAAGATGAAAGCGGGGTGCTTCAAGCTTATATCTCAAAGAACGATGTGGGCGAAGATTTTGC GTATATCAAAAAGATATTAGAAGTGGGGGATATAATCAATGTATCAGGTTATGCGTTTGTAACTAAAACCGGGGAGCTAA GTATCCACACGCTAAGCTTTAAGATTCTAAGCAAAAGTATCGTGCCACTGCCGGAGAAATTCCACGGGCTAAGCGATATA GAGTTGCGTTACCGCCAACGCTATGTGGATTTGATTGTAAATGAGAATGTCAAAGAAACCTTTAAATTACGCAGTAAAAT CATCTCGTGTGTGCGGCAGTTTTTTGAAAAAAAAGGATTTTTAGAAGTAGAAACGCCTATGCTTCACCCAATCCCCGGCG GTGCAAATGCGCGTCCTTTTATCACACATCATAATGCCCTTGATGTGGAGCGGTATTTACGCATTGCCCCAGAGTTATAT CTTAAAAGGCTTATTGTAGGCGGATTTGAAACCATTTTTGAGCTGAATCGTAATTTTCGCAACGAGGGAATGGACCACTC GCATAATCCCGAATTTAGTATGATTGAATTTTACTGGGCGTATAAGACTTATGAAGATCTCATCACACTCACCCAAGAGC TTTTTACATATCTTTTAGAAGAGCTTAAACTCCCTAAGATTCTAAAGCACAACGACACAGAGATTGACTTTAGCAAATGG CAGATTCTAAGCTACAAAGAAGCCTTAGAATCCATAGGCGGATTAGATAAACATATCATTGAAAACAAGGAATTATTGCT TCAAACACTCCAAGAGAGACATCTCAAGATTGATAGTTCTTTCAGCTATGGAAAGCTTTTGGGAGAGGCATTTGATGAGT TTGTAGAATCTAAACTTATCAATCCCACTTTTATCACGCAATATCCCATTGACATTAGCCCACTTGCAAGACGCAATGAT GAGAATCTAGAGATTGCTGATAGGTTTGAGCTTTTTATCGGTGGTAAGGAAATAGCCAATGGATTTAGTGAGCTAAATGA TCCACTTGACCAGCTTGAGCGTTTTAAAGAACAAGTCAAGGCAAAGGACGCAGGAGATGAAGAGGCTCAATATATGGACG AAGATTATGTATGGGCTTTAGCACACGGAATGCCCCCAACTGCGGGTGAAGGCATAGGGATTGATAGGCTAGTTATGCTT TTAAGCGATGCAAAAAGCATTAAAGATGTGATTTTATTCCCTGCTTTAAAGCCAAGTAAAACAAATTTTGATATAATGCC AAGCGATGATACTGCTCAAGCCAATCAAGGAAGCCCAAATCACGCAAATAAGGAGAAATGA Protein sequence : MFSNFYIQQRIKKMQLMREEGLNPYANDTKRTISNNDFLQKYAFLKSQEQGAESADSSSTKSQPIESIVGRVRFIRLMGK ACFVKIQDESGVLQAYISKNDVGEDFAYIKKILEVGDIINVSGYAFVTKTGELSIHTLSFKILSKSIVPLPEKFHGLSDI ELRYRQRYVDLIVNENVKETFKLRSKIISCVRQFFEKKGFLEVETPMLHPIPGGANARPFITHHNALDVERYLRIAPELY LKRLIVGGFETIFELNRNFRNEGMDHSHNPEFSMIEFYWAYKTYEDLITLTQELFTYLLEELKLPKILKHNDTEIDFSKW QILSYKEALESIGGLDKHIIENKELLLQTLQERHLKIDSSFSYGKLLGEAFDEFVESKLINPTFITQYPIDISPLARRND ENLEIADRFELFIGGKEIANGFSELNDPLDQLERFKEQVKAKDAGDEEAQYMDEDYVWALAHGMPPTAGEGIGIDRLVML LSDAKSIKDVILFPALKPSKTNFDIMPSDDTAQANQGSPNHANKEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-107 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_006235225.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-107 | 49 |
