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Name : serS (HCN_0652) Accession : YP_006235035.1 Strain : Helicobacter cinaedi PAGU611 Genome accession: NC_017761 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : - Position : 669057 - 670334 bp Length : 1278 bp Strand : + Note : - DNA sequence : ATGATTGACACAAAGGCTTTGATAAATGATTTTGATAGGGTGAGTGAGCTACTTTGTATAAAAAAAGTGAGTGAAGATAC ACTCAAAGCACTAAAAGATCTTGCCATTGCGTATAAAAGCACAAAGCAGGAGCTTGAATCTCTCCAAGCCTTTCAAAATA AAGGCTCTCAAAAGCTTGGGCTATGGTTTAGAAGTGATGGGTGTCAAGATTTGATTGATGATTTAAAGTCGCAACTTGAT GAAAATAAGAAAAAAATGAATAATGTAGAATCTAGGCTTAAGACTATTGAAGCAGAGCTTGAAAACCTTGCCTATACTAT TCCAAACTTGCCCGATTCTGCTACGCCAAAGGGCGAAGATGAGAGTGATAATATTGAGCTAAAAAAGGTGCTAGAGCCTA GAATCTTTGACTTTACCCCAAAGGAGCATTGGGAGCTAGGTGTGGATAATGGCTGGATTGACTTTGAATCTGGGGTGAAG CTTGCTAAAAGTCGCTTTTCTGTCCTGCGTGGAATGGGGGCAAAACTCAATCGTGCGTTAATTAACTTTATGCTTGATTA TAATGAAAGGCAGGGCTTTGAATCCGTGGTAACGCCTGTGATTGCTAATGCTAGGACGCTTTTTGGCACCGGGCAGTTGC CGAAGTTTGAAAATGATATGTTTAAGGTGGATTCTCATTTTGATGAAGAGGGGAGCGAACACGATTTATACCTTATCTCT ACTTCGGAAATCACACTTACAAATCTCTATCAAGACAGCATTATCCCAAGTGAGAACTTGCCTATAATGCTGACTTCTCA CACACCTTGTTTTCGCAAAGAGGCTGGTAGTGCGGGGCGAGATACACGCGGTATGATACGCCAACATCAATTTGACAAAG TGGAGCTTGTGGCGATTACTCATCCAAGCCAAAGTGAAGCTATGCAGGAAAAAATGCTAAAAACAGCAAGCGGGATTCTA AGTGAGCTAGGACTCCCGCACCGCTTTATGCGGCTTTGTGGGGGGGATTTGGGCTTTAGTGCGAGTAATACTATTGATAT TGAAGTGTGGCTACCCGGGCAGAACTGCTACCGCGAGATAAGCTCTATTTCAAATACGCGGGACTTTCAAGCACGAAGGG CAAAAATCCGCTATAAAGAAAATGGTAAAAACGCGTTAGTGCATACGCTCAATGGCTCATCATTAGCAGTAGGCAGGACA CTCATTGCCATTATGGAAAATTACCAAAGGGCTGATGGGAGCATAGAAATCCCAAAAGTGCTAGAAAAATATCTATAA Protein sequence : MIDTKALINDFDRVSELLCIKKVSEDTLKALKDLAIAYKSTKQELESLQAFQNKGSQKLGLWFRSDGCQDLIDDLKSQLD ENKKKMNNVESRLKTIEAELENLAYTIPNLPDSATPKGEDESDNIELKKVLEPRIFDFTPKEHWELGVDNGWIDFESGVK LAKSRFSVLRGMGAKLNRALINFMLDYNERQGFESVVTPVIANARTLFGTGQLPKFENDMFKVDSHFDEEGSEHDLYLIS TSEITLTNLYQDSIIPSENLPIMLTSHTPCFRKEAGSAGRDTRGMIRQHQFDKVELVAITHPSQSEAMQEKMLKTASGIL SELGLPHRFMRLCGGDLGFSASNTIDIEVWLPGQNCYREISSISNTRDFQARRAKIRYKENGKNALVHTLNGSSLAVGRT LIAIMENYQRADGSIEIPKVLEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-82 | 45 |
