Gene Information

Name : HCN_0446 (HCN_0446)
Accession : YP_006234853.1
Strain : Helicobacter cinaedi PAGU611
Genome accession: NC_017761
Putative virulence/resistance : Resistance
Product : phosphate regulon response regulator PhoB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 461545 - 462213 bp
Length : 669 bp
Strand : +
Note : -

DNA sequence : 
GTGATTTTTATACTTGAAGATGATGAGGGGATTTTGAGTCTTGTGCTGTATGCGTTAAACTCTGCAAATTTAAAGGCAAA
GGGCTTTAGTCTGCCGAGTGAATTTTGGGAAGCTATGGCAAAGGAATCGCCTTCCTGCGTGGTGCTTGATGTGATGCTGC
CTCAAGAAGATGGGCTAAGTGTTTTACACAAAATGCGTCAAAATCATAAGAGCAAAAATATCCCCGTGATAATGCTAACC
GCACTTGGAAGTGAGTTTGATAAGATTAAGGGGCTAGATGGCGGGGCTGATGACTATCTTACCAAGCCTTTTAGTGCTTT
GGAGCTTATTGCTAGAATTAAAGCGTTGTTGCGTAGAAGCCATACGCAGAATGATTGTGAGATGAGTTATGGCGATTTGA
AATACTCTAAAACAATCCATAGCGTGAGTATAGGCGGAGAATCTTTACATCTCACATTAAAAGAGTTTGAGCTTTTGGGA
TTGCTAATGAGCTCTACTAATCGTGTTTTTAGCAGAGAAGAGTTGCTTGAAATTATTTGGGGGTATAATATCTCTGGGAC
ACGCACGATTGATATTCACATTAACACCTTGCGTTCAAAGCTTGGCAAGTATGGCAAACATATCAAAACAATACGCGGTG
TGGGGTATCAGTTTAATACAAACGCATAG

Protein sequence : 
MIFILEDDEGILSLVLYALNSANLKAKGFSLPSEFWEAMAKESPSCVVLDVMLPQEDGLSVLHKMRQNHKSKNIPVIMLT
ALGSEFDKIKGLDGGADDYLTKPFSALELIARIKALLRRSHTQNDCEMSYGDLKYSKTIHSVSIGGESLHLTLKEFELLG
LLMSSTNRVFSREELLEIIWGYNISGTRTIDIHINTLRSKLGKYGKHIKTIRGVGYQFNTNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-18 42
vanRB YP_008394254.1 DNA-binding response regulator VanRB Not tested Not named Protein 5e-19 41
vanRB NP_815956.1 DNA-binding response regulator VanRB Not tested Not named Protein 2e-18 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-17 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB CP001918.1.gene5135. Protein 2e-18 44
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB CP001138.1.gene4273. Protein 2e-18 44
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB CP000034.1.gene3834. Protein 7e-18 43
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB CP000647.1.gene4257. Protein 4e-18 43
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB NC_002695.1.915041.p Protein 7e-18 43
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB BAC0533 Protein 4e-18 43
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB CP000675.2.gene1535. Protein 5e-20 42
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB CP004022.1.gene3215. Protein 2e-17 42
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB NC_012469.1.7686381. Protein 7e-26 41
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB AF310956.2.orf0.gene Protein 2e-19 41
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB AE016830.1.gene2255. Protein 7e-19 41
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB U35369.1.gene1.p01 Protein 7e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB VFG0473 Protein 2e-21 46
HCN_0446 YP_006234853.1 phosphate regulon response regulator PhoB VFG0596 Protein 2e-18 42