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Name : HCN_1916 (HCN_1916) Accession : YP_006236183.1 Strain : Helicobacter cinaedi PAGU611 Genome accession: NC_017761 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : - COG ID : - EC number : - Position : 1902874 - 1904442 bp Length : 1569 bp Strand : + Note : a part of conjugal transfer protein TraG DNA sequence : ATGTTTCTTAAACCCAAAAAGAGCCTTGATTCTCACGGCAAGGCAAGATGGGCTAATCAACACGACATAGAAAAAAGCGA TTTTCATTTGAATAAGCTTATAAAAGACTTTTTTGGCTTACTCAATCCCTTAAATTTCACGCCACAAAAATATTGGAAAG CTTTTAGAAAATTCTTAGATTTTGGATTTGTAACAACCACGCCTATGCTTGATACAAACTTTAGTAGAGGCGGTTTTCTC TTAGGTATTTATAAAGACTTATGGAAGCAAAGAAAAGTCTATTATGATGCCCCTCTATCAGCACTTATTGTAGCACCACC CGGAGCTGGTAAATCAGCAGCTGTGGCAATACCCAATCTATTGAATTTACCTACAAGTTGTGTGGTGCTTGATATTAAAG GGGAGCTTTGCGATCTCACAGCAGGATATAGACAAAAGGCGTTTAATAATGAAATATATATCTTTAACCCACTAGGCAAG GATAATAACCTTAAATTTAATCCTTTTGATAATAAAATCGTAAAAAAACTAGATTTTAATGCTAAAAAACGCCTTGTAGA TGAGATTGCAAATACAATATTTGTAGAAGAACAAGACAGCGATCCGCATTGGATTGCAAAAGCAAGGGAGCTTTTTACAT TTTATGCCCTTTATGATATTTGCACCAAAAATGAAAGCAATTTTTTTGATATTGCCACAGCCCCTGTTAAAGACTATAAA CCTCTCATAGAAGAAAAGTCGCCCTATTATTCAAAACTTTGGGATTTTAATGAAAAAACTCAAAAAAGAGAGTTAAACCT TGATGCCAATCCTGAAAAGCTTTTTTACTCGCAATGTGCTGACCAAAAATATGCAGATGTTAAGAATCCTTTAAATTGGG AATATGAAAGCTTTGAGCAAATACAAGCCAACAAAGAAAAAGGCATTGAAACACTTGATGAAGTTGTAAGAAACTATGCA AGAGCGTGGGCAAATGCTGCTGATGAAGAGTTTTCAAGTATCAAATCTACATTTAATCGTGTAATGAGCGTGTTTGCAAG TTATCAAGTAAGAGATGCTACAAATGCTATGAGCTTTGAATATGATGACTTAAGAAGCAAGAACATTACACTCTACATTA AAATCGCACAAACTGATATTGATACGCTTAAATCGCTTATCCGTGTGCTTTTAGAATCTATTGCCAAAAATCTAATGACA AAAGAAAGTAAAAAATTAGATGAGAGAATTTATCTCGTGCTTGATGAGTTTATACGCTTTGGAAAAATGCCATTTTTGTT AGAAATGCCAGCTCTTTGTAGAAGCTATGGCATTGTACCGCTCTATATCACACAATCTTATGGACTAATTAAAAAATACT ACGGCGAAGATGATTTAAAAACAATGACTGACACCATTGCCTTTCAAATCCTTTTTAAAATGAATGATGCGGATTCTGCG GAAAATGTCTCAAAACAAATAGGCAAATACACAAGAGAAGCAAGAAGTCATAGCACCAAAGATGGAGCTATCGCATTTGG AGGGAACAGAGCTTATTACCGCTCAAGATATTTTAAATATCCCAAATGA Protein sequence : MFLKPKKSLDSHGKARWANQHDIEKSDFHLNKLIKDFFGLLNPLNFTPQKYWKAFRKFLDFGFVTTTPMLDTNFSRGGFL LGIYKDLWKQRKVYYDAPLSALIVAPPGAGKSAAVAIPNLLNLPTSCVVLDIKGELCDLTAGYRQKAFNNEIYIFNPLGK DNNLKFNPFDNKIVKKLDFNAKKRLVDEIANTIFVEEQDSDPHWIAKARELFTFYALYDICTKNESNFFDIATAPVKDYK PLIEEKSPYYSKLWDFNEKTQKRELNLDANPEKLFYSQCADQKYADVKNPLNWEYESFEQIQANKEKGIETLDEVVRNYA RAWANAADEEFSSIKSTFNRVMSVFASYQVRDATNAMSFEYDDLRSKNITLYIKIAQTDIDTLKSLIRVLLESIAKNLMT KESKKLDERIYLVLDEFIRFGKMPFLLEMPALCRSYGIVPLYITQSYGLIKKYYGEDDLKTMTDTIAFQILFKMNDADSA ENVSKQIGKYTREARSHSTKDGAIAFGGNRAYYRSRYFKYPK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virD4-1 | YP_002301090.1 | VirD4 coupling protein | Virulence | cag PAI | Protein | 5e-120 | 55 |
