Gene Information

Name : HPPC18_02580 (HPPC18_02580)
Accession : YP_006228782.1
Strain : Helicobacter pylori PeCan18
Genome accession: NC_017742
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 536586 - 537698 bp
Length : 1113 bp
Strand : -
Note : COG0249 Mismatch repair ATPase (MutS family)

DNA sequence : 
ATGGCAGGCACACAAGCTATATATGAATCATCTTCTGCAGGCTTCTTATCGCAAGTCTCATCAGTCATCTCAAGCACAAG
TGGTGTTGCAGGGCCATTTGCAGGAATAGTGGCGGGTGCTATGACAGCGGCGATTATTCCTATTGTTGTGGGATTTACTA
ATCCGCAAATGACCGCTATCATGACCCAATACAATCAGAGCATCGCTGAAGCCGTAAGCATGCCTATGAAAGCCGCTAAC
CAGCAATACAACCAATTGTATCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAACAATATCTTAAATATTAGCAAATT
AACAGGGGAATTTAACGCGCAAGGCAACACGCAAGGCGCGCAAATTGGTGCTGTTAATAGTCAAATTGCAAGCATTTTAG
CGAGTAACACTACCCCTAAAAATCCTAGTGCTATTGAAGCTTATGCGACAAATCAAATCGCTGTTCCTAGCGTGCCAACA
ACGGTTGAAATGATGAGTGGCATCTTAGGCAATATTACAAGTGCAGCACCAAAATACGCCCTAGCTCTACAAGAGCAACT
GCATTCTCAAGCAAGCAACAGCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGTGCGCTTGTTG
GCTCATCAAAAGTGTTTTTCAGTTGCATGCAAATTTCTATGACTCCTGTGAGTGTTTCTATGCCCACTGTTTATGCTAAA
TACCAAGCGTTAGCCACTAATGCCCTAACTTCAGGCGTTAATCCTATGACCACTCCTGCATGCCCTATTGGGGACAAGGT
TCTTGCTGTTTATTGCTATGCTGAAAAAGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCA
ATTTGTTGCAGAACGCTTCTCAAATGATACTCGGTCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCT
AACATAAGCTCGCTATATAACTACAATATAGTAGCGAATAAATCTTTTTTGAAATCGCATCTGACTTATCTTGATTACAT
CAAAGACAAACTTAAGGGGCAAAAAGATAGCTACCTAACAGAAAGGGTGCAAACTAAAATAATCGTAAAGTGA

Protein sequence : 
MAGTQAIYESSSAGFLSQVSSVISSTSGVAGPFAGIVAGAMTAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSMPMKAAN
QQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQIGAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPT
TVEMMSGILGNITSAAPKYALALQEQLHSQASNSSMNDTADSLDSCTALGALVGSSKVFFSCMQISMTPVSVSMPTVYAK
YQALATNALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILGQSGLATSTYDTQAIS
NISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagH AAC44699.1 CagH Virulence cag PAI Protein 1e-159 99
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 6e-158 98
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-158 98
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 1e-156 98
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 3e-156 98
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-157 98
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 2e-157 98
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 2e-156 98
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 2e-157 98
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 7e-157 98
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 2e-157 98
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 5e-157 98
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-157 98
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-156 98
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 1e-157 98
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 8e-158 98
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-155 97
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-156 97
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-156 97
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 2e-156 97
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-156 97
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-156 97
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-156 97
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-156 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPPC18_02580 YP_006228782.1 cag island protein VFG0300 Protein 8e-157 97