Gene Information

Name : HPPC18_02570 (HPPC18_02570)
Accession : YP_006228780.1
Strain : Helicobacter pylori PeCan18
Genome accession: NC_017742
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagL
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 534732 - 535439 bp
Length : 708 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAACACTCGTGAAAAATACCATATCTTCTTTTTTGCTATTGTCTGTTTTGATGGCAGAATATATAACAAGCGGCTT
AGAGCAACTTGATAGAACCTACAAAGAGACCAACCAACAAGTGCTCAAAAACTTAGATGAGATTTTTTCAACCACTAGCC
CTAGCGCTAATATAGGTAAAGAAGATGCTCTAAACATCCAAAAAGCAGCCATGGCTTTGAGGGGAGATTTAGCGTTATTG
AAAGCCAATTTTGAAGCGAATGAGTTATTTTTCATCTCAGAAGATGTGATCTTCAAGACTTATATGTCTAGCCCTGAACT
TTTATTAACCTATATGAAAATCAATCCCTTAGACCAAAACACTGCTGAGCAGCAATGCGGAATATCCGATAAAGTTTTAG
TTCTTTATTGTGAGGGGAAGCTGAAAATCGAGCAAGAAAAACAAAATATAAGAGAGCGTTTAGAAACTTCTCTAAAGGCG
TATCAGAGCAACATTGGAGGTACAGCTTCCTTAATCACTGCTTCACAGACGCTTGTAGAAAGCCTAAAGAATAAAAATTT
CATCAAAGGAATCAGAAAGCTTATGTTAGCTCACAACAAGGTCTTTTTAAATTATTTAGAGAAGTTGGACGCATTAGAAA
TATCCCTAGAACAAAGTAAGCGACAATACCTACAAGAAAGGCAATCAAGTAAGATTATTGTTAAATGA

Protein sequence : 
MKTLVKNTISSFLLLSVLMAEYITSGLEQLDRTYKETNQQVLKNLDEIFSTTSPSANIGKEDALNIQKAAMALRGDLALL
KANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQNTAEQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSLKA
YQSNIGGTASLITASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEKLDALEISLEQSKRQYLQERQSSKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0539 BAD13845.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-98 96
HP0539 BAD13955.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-99 96
HP0539 BAD13872.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-99 96
cagL YP_005775739.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-98 96
HP0539 BAD14010.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-99 96
cagL YP_005774532.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-98 96
HP0539 BAD13818.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-99 96
cagL AGC69801.1 cag pathogenicity island protein L Virulence cag PAI Protein 2e-97 96
cagL YP_005777280.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-98 96
HP0539 BAD13791.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-99 96
HP0539 BAD13982.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-97 96
cagL YP_005779054.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-99 96
HP0539 BAD14064.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-99 96
cag18 AAR03873.1 Cag18 Virulence cag PAI Protein 1e-97 96
HP0539 BAD13900.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-98 95
cag18 AAR03901.1 Cag18 Virulence cag PAI Protein 4e-96 95
cagL NP_223205.1 cag island protein Virulence cag PAI Protein 2e-95 95
cag18 AAR03962.1 Cag18 Virulence cag PAI Protein 4e-96 95
HP0539 NP_207335.1 cag pathogenicity island protein (cag18) Virulence cag PAI Protein 1e-96 95
cag18 AAR03931.1 Cag18 Virulence cag PAI Protein 2e-96 95
cagL YP_003728725.1 cag pathogenicity island protein L Virulence cag PAI Protein 3e-97 95
cagL AAC44697.1 CagL Virulence cag PAI Protein 1e-96 95
HP0539 BAD14037.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-97 95
HP0539 BAD13927.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-95 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPPC18_02570 YP_006228780.1 cag pathogenicity island protein CagL VFG0298 Protein 6e-97 95