Gene Information

Name : HPPC18_02565 (HPPC18_02565)
Accession : YP_006228779.1
Strain : Helicobacter pylori PeCan18
Genome accession: NC_017742
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagN
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 533729 - 534649 bp
Length : 921 bp
Strand : +
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTCTTTGGTTATTTATGGGGGCTTAAACGCTATCAATAC
GGCATTATTACCGAGTGAATACAAAGAATTGGTGGCTTTAGGCTTTAAAAAAATCAAAACACTCTATCAAAGACATGACG
ACAAAGAAGTTACAGAAGAGGAAAAAAAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCG
GAGCAAATTCAAAAAAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGACTAAGCACAAAGG
ATTACAAGAATTAAACGAAACTAACGCTAACCCTTTGAATGGCAATCCTAATAGTAATTCTTCCACTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTGAAACCTGCTGCTCCGCTTGTGCCTAAT
GAGTGGAGAACACCTGAAATTGAAACCACTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGGCATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAGCTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCGTGT
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAGTTTGGAGC
TACTGATACAAAAAAAAATGAAGCAAAAGATGCAGCATTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYSLVIYGGLNAINTALLPSEYKELVALGFKKIKTLYQRHDDKEVTEEEKKFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSIQKKATKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEMINKVNEAFVKPAAPLVPN
EWRTPEIETTINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNYQDTTNASEFGATDTKKNEAKDAAFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-109 97
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-115 97
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-109 97
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-110 97
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 6e-111 96
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-107 96
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-107 96
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-107 96
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-114 96
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-108 96
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-108 96
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-108 96
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-112 96
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-114 96
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 7e-115 96
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 2e-114 96
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-116 95
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-120 95
cagN AAF80207.2 CagN Virulence cag PAI Protein 2e-115 95
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 2e-114 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 2e-113 95
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 6e-114 95
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 2e-115 94
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 5e-113 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPPC18_02565 YP_006228779.1 cag pathogenicity island protein CagN VFG0297 Protein 3e-115 96