Gene Information

Name : HPPC18_02545 (HPPC18_02545)
Accession : YP_006228775.1
Strain : Helicobacter pylori PeCan18
Genome accession: NC_017742
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cag11)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 528041 - 528697 bp
Length : 657 bp
Strand : +
Note : -

DNA sequence : 
ATGAACGATACAACAGAACATCATGGACCTAATCCGCTAAACGCCCCACCACCTAGCAACTCACAGAGCAATGATCTCTT
AAATTTGCTAGACTCGTTATATCCCAAAGGGAGTTTAGGGGAACAAAGATTTCACGAAGCTTTAAAGAATCAAGAAGAGT
TGAAAAATATCCTAATAGAAATAGAAAAGCTACCGCAAGAAAAAAGGTATGAACTTCTGATGCAGATAGGACAAGCCAAA
CAGAGAATAATGGAAGCATACGCTCATTCATTCTTAGGGTATATAGGGGGACTAGAGTATCTGTTAGGATTGTGTATGGG
TGGGATATTTGTTTTGTTTGCAGTCTATTTTGTCTTTTTAAGAACTAGCAAAAACACAGAGCTAGTGGAAAGTCTAAAAA
CAAAACTAAAACTTCAGTATTTTTACTATGCCTTTGGCGTGGGTGCGGTTTTGTTTTTTGGATTAGAGACAATTAGATCT
ATTTATGAACTGTATATATTAGGAATTGGTAGCACTAACGACAAGGTGCTCTTTGTTTTGAAAAACATTTGCTTCATAGG
TATGGGCTATTTGATTTATAAAGTTATTAAGGTTATTGGTATAAAAAATTTTATCAATGGTCTTTTCACTTCAAAGAAAC
AAGGCGGTGCAGAATGA

Protein sequence : 
MNDTTEHHGPNPLNAPPPSNSQSNDLLNLLDSLYPKGSLGEQRFHEALKNQEELKNILIEIEKLPQEKRYELLMQIGQAK
QRIMEAYAHSFLGYIGGLEYLLGLCMGGIFVLFAVYFVFLRTSKNTELVESLKTKLKLQYFYYAFGVGAVLFFGLETIRS
IYELYILGIGSTNDKVLFVLKNICFIGMGYLIYKVIKVIGIKNFINGLFTSKKQGGAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0531 NP_207327.1 cag pathogenicity island protein (cag11) Virulence cag PAI Protein 2e-69 99
orf18 NP_223198.1 cag island protein Virulence cag PAI Protein 7e-70 99
HP0531 BAD13919.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-69 99
cagU YP_003728733.1 cag pathogenicity island protein U Virulence cag PAI Protein 9e-68 99
cagU AGC69798.1 cag pathogenicity island protein U Virulence cag PAI Protein 6e-68 99
HP0531 BAD13974.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-67 98
HP0531 BAD14030.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-68 98
HP0531 BAD13837.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-68 97
cagU YP_005775734.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-68 97
cagU YP_005779059.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-68 97
cagU YP_005774538.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-68 97
HP0531 BAD13783.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-68 97
HP0531 BAD14056.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-68 97
HP0531 BAD13864.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-68 97
cag11 AAR03866.1 Cag11 Virulence cag PAI Protein 4e-68 97
cag11 AAR03924.1 Cag11 Virulence cag PAI Protein 3e-68 97
cag11 AAR03955.1 Cag11 Virulence cag PAI Protein 2e-67 97
HP0531 BAD13810.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-67 96
HP0531 BAD13947.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-68 96
HP0531 BAD14002.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-68 96
HP0531 BAD13892.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-67 96
cagU YP_005777275.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-67 96
cag11 AAR03894.1 Cag11 Virulence cag PAI Protein 9e-68 96
cag-U AAF80202.1 Cag-U Virulence cag PAI Protein 6e-68 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPPC18_02545 YP_006228775.1 cag pathogenicity island protein (cag11) VFG0291 Protein 6e-70 99