Gene Information

Name : HPPC18_02530 (HPPC18_02530)
Accession : YP_006228772.1
Strain : Helicobacter pylori PeCan18
Genome accession: NC_017742
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein X
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 523656 - 525221 bp
Length : 1566 bp
Strand : -
Note : COG3504 Type IV secretory pathway, VirB9 components

DNA sequence : 
ATGGAGCAGGCATTTTTTAAAAAAATTGTTGGCTGTTTCTGTCTTGGTTATTTATTTTTATCTAGCGTAATAGAAGCAGC
ACCTGACATTAAAAATTTTAATCGTGGCAGGGTGAAAGTGGTGAATAAGAAGATTGCTTATTTGGGAGATGAAAAACCCA
TCACGATTTGGACTTCATTAGACAATGTTACTGTGATCCAACTTGAAAAAGATGAAACTATTTCTTACATCACAACAGGT
TTCAATAAAGGTTGGAGTATTATGCCTAATTCTAATCATATATTCATTCAACCTAAATCGGTAAAAAGTAATCTCATGTT
TGAAAAAGAAGCAGTGAATTTTGCCCTAATGACAAGAGATTACCAAGAATTTTTAAAAACAAAAAAACTTATCGTAGATG
CGCCTGACCCTAAAGAATTAGAAGAACAAAAAAAAGCTCTAGAAAAAGAAAAAGAAGCTAAAGAACAGGTGCAAAAGGCG
CAAAAAGATAAAAGAGAAAAAAGAAAGGAGGAGCGTGCAAAAAATAGAGCCAATTTAGAAAATCTCACTAACGCTATGAG
TAACCCACAAAATTTGAGCAATAACAAAAATCTTAGCGAATTGATCAAGCAACAACGAGAAAATGAATTAGACCAAATGG
AACGACTAGAGGACATGCAAGAGCAGGCTCAAGCTAATGCGCTCAAACAAATTGAAGAACTCAACAAGAAACAAGCTGAA
GAGACAATCAAGCAAAGAGCCAAAGATAAAATCAGTATTAAGACAGATAAATCTCAAAAAAGCCCTGAGGATAACTCCAT
AGAATTATCTCCTAGCGATAGCGCTTGGAGAACTAATCTTGTTGTGCGGACCAATAAGGCCTTGTATCAATTCATTTTGA
GAATAGCTCAAAAAGACAATTTTGCTTCGGCGTATCTAACAGTCAAATTAGAATACCCACAAAGACACGAAGTCTCTAGC
GTTATTGAAGGGGAGCTAAAAAAGAGAGAAGAAGCAAAGAGGCAGAGAGAATTGATTAAGCAAGAAAATCTTAACACCAC
AGCCTACATCAATAGAGTAATGATGGCGAGCAATGAACAGATTATCAACAAAGAAAAAATAAGAGAAGAAAAACAAAAAA
TTATCTTAGATCAAGCAAAGGCGCTAGAGACTCAATATGTGCATAATGCATTAAAAAGAAACCCTGTGCCTAGAAACTAC
AATTACTACCAAGCGCCTGAAAAACGCTCTAAGCATATTATGCCCTCTGAAATTTTTGATGATGGCACATTCACTTATTT
TGGTTTCAAAAACATCACCCTCCAACCTGCTATTTTTGTGGTTCAGCCTGATGGGAAATTAAGCATGACTGATGCTGCTA
TTGATCCTAATATGACCAATTCAGGATTGAGATGGTATAGAGTTAATGAAATTGCAGAAAAGTTTAAGCTCATTAAAGAC
AAAGCCCTTGTAACAGTAATAAATAAAGGCTATGGGAAAAATCCATTGACAAAAAATTACAATATCAAAAACTATGGTGA
ATTGGAGCGTGTGATTAAAAAGCTCCCTCTTGTCAGAGATAAATAA

Protein sequence : 
MEQAFFKKIVGCFCLGYLFLSSVIEAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTSLDNVTVIQLEKDETISYITTG
FNKGWSIMPNSNHIFIQPKSVKSNLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQVQKA
QKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAE
ETIKQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVSS
VIEGELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNY
NYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIKD
KALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0528 BAD14053.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag8 AAR03863.1 Cag8 Virulence cag PAI Protein 0.0 99
cag-X AAF80199.1 Cag-X Virulence cag PAI Protein 0.0 99
HP0528 BAD13861.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD13971.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagX YP_005777272.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD13944.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagX YP_005779062.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD13834.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagX YP_005775731.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD13807.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag8 AAR03921.1 Cag8 Virulence cag PAI Protein 0.0 99
cagX YP_005774541.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD13889.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD13999.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 NP_207324.1 cag pathogenicity island protein (cag8) Virulence cag PAI Protein 0.0 98
cag8 AAR03891.1 Cag8 Virulence cag PAI Protein 0.0 98
orf15 NP_223195.1 cag island protein Virulence cag PAI Protein 0.0 98
HP0528 BAD14027.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0528 BAD13780.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0528 BAD13916.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagX AGC69795.1 cag pathogenicity island protein X Virulence cag PAI Protein 0.0 98
cagX YP_003728736.1 cag pathogenicity island protein X Virulence cag PAI Protein 0.0 98
cag8 AAR03952.1 Cag8 Virulence cag PAI Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPPC18_02530 YP_006228772.1 cag pathogenicity island protein X VFG0288 Protein 0.0 98