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Name : HPPC18_07195 (HPPC18_07195) Accession : YP_006229656.1 Strain : Helicobacter pylori PeCan18 Genome accession: NC_017742 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 1500660 - 1501907 bp Length : 1248 bp Strand : + Note : COG0172 Seryl-tRNA synthetase DNA sequence : ATGATTGATAGAAAACTTTTATTGCAAGATTTTGACAAGGTGGCTCTTTCTTTAAAAAAGCGTAACCATGCGATGGGTGA TGAGTTGGAGCGTTTGCACGAAGCCATCACGCATTATAAAAAGCAACTCATTGAATTAGAAGGCTTGCAGGCCTTTCAAA ACAAGGTTTCTAAAGAGTTTGGTATCAAAATGGCTCAAAAAATGGATACAAGCGATCTTAAAAAAGAGCTAGAAAACAAT AAAATCAAACTGAATGAGCTTTCCAAAAGCGTGGGCGAAGCAGAACAAGAAATGGATTTAAAGCTTTCCATAATCCCTAA TTTAGTGGATGAAAAAACCCCTTTAGGCGCGAATGAAGAAGACAATATAGAAATTAAAAAAATCTTAACCCCAAGAAATT TTACTTTCAAACCCAAAGAGCATTTTGAACTCGCCCAAAAAAACGGCTGGATTGATTTTGAAAGCGGCGTGAAACTCGCC AAAAGCCGTTTTTCGGTCATTAGGGGTTTTGGGGCGAAAATTTATCGCGCGCTCATCCATTTAATGTTAGATTTTAATGA AAAAAACGGCTTTGAAATCATCTACACGCCGGCGTTAGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTACCCAAAT TCAAAGAAGATGTTTTCAAAATAGAAAATGAAAATTTGTATTTGATCCCTACCGCTGAAGTAACGCTCACCAATTTATAC AACGACACCATTATCAGCGTTGAAAACCTCCCCATTAAAATGACCGCGCACACGCCTTGTTTCAGGAGCGAAGCAGGGAG CGCGGGCAAGGACACAAGGGGGATGATAAGACAACACCAGTTTGATAAAGTAGAGCTTGTGGCTATCACGCACCCTAAAG AAAGCGATGCGATGCAAGAGTGCATGCTAGAGAGCGCGAGCGAAATTTTAAGGGCTTTGGAATTACCGCACCGGTTCGTG CAATTGTGCAGCGGGGATTTAGGCTTTAGCGCGAGCAACACGATAGACATTGAAGTGTGGCTACCCGGGCAAAATTGTTA CAGAGAAATCAGCTCCGTGTCTAACACGAGAGACTTTCAAGCTAGGCGCGCTAAAATCCGCTTCAAAGAAAATCAAAAAA ACCAATTAGTGCACACCTTAAACGGCTCTTCTTTAGCGGTAGGCAGGACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATCCATATTCCTAAGGTGTTAGAAAAATACCTTTAA Protein sequence : MIDRKLLLQDFDKVALSLKKRNHAMGDELERLHEAITHYKKQLIELEGLQAFQNKVSKEFGIKMAQKMDTSDLKKELENN KIKLNELSKSVGEAEQEMDLKLSIIPNLVDEKTPLGANEEDNIEIKKILTPRNFTFKPKEHFELAQKNGWIDFESGVKLA KSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLY NDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDAMQECMLESASEILRALELPHRFV QLCSGDLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLVHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKVLEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-76 | 46 |
