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Name : HPSH112_04490 (HPSH112_04490) Accession : YP_006227592.1 Strain : Helicobacter pylori Shi112 Genome accession: NC_017741 Putative virulence/resistance : Virulence Product : glutamine synthetase Function : - COG functional category : - COG ID : - EC number : - Position : 908090 - 909535 bp Length : 1446 bp Strand : + Note : COG0174 Glutamine synthetase DNA sequence : ATGGTAGTAAGAACTCAAAATAGTGAAAGCAAGATCAAAGAGTTTTTTGAATTTTGCAAAGAAAATGAAGTGGAATTTGT GGATTTTAGATTCAGCGATATTAAAGGCACTTGGAATCACATCGCTTATTCTTTTGGGGCTTTAACGCATGGCATGTTTA AAGAGGGGATTCCTTTTGATGCGAGTTGTTTTAAAGGCTGGCAAGGCATTGAACACTCCGATATGATTTTAACCCCTGAT TTGGTGCGTTATTTCATTGACCCTTTTAGCGCGGATGTGAGCGTGGTCGTGTTTTGCGATGTGTATGATGTGTATAAAAA CCAGCCTTATGAGAAATGCCCTAGAAGTATCGCTAAAAAAGCCTTACAGCATTTAAAAGATTCAGGTTTGGGCGATGTGG CTTATTTTGGTGCAGAGAACGAATTTTTCATCTTTGATTCCATTAAGATTAAAGACGCTTCCAATTCCCAATACTACGAA GTGGATAGCGAAGAGGGCGAATGGAATAGGGATAAGAGCTTTGAAAATGGCGTGAATTTTGGGCATAGACCGGGCAAACA AGGGGGCTATATGCCTGTGCCGCCAACGGATACGATGATGGATATTCGCACAGAAATTGTGAAAGTCTTAAACCAAGTGG GGTTAGAAACTTTTGTCGTCCATCATGAAGTCGCGCAAGCGCAAGGCGAAGTGGGCGTGAAATTTGGGGATTTAGTGGAA GCCGCTGACAATGTCCAAAAACTCAAATATGTGGTTAAAATGGTCGCTCATTTAAACGGCAAAACCGCCACTTTCATGCC AAAACCTTTATATGGGGATAACGGGAGCGGGATGCACACCCATGTGAGTGTTTGGAAAAACAACGAAAACCTTTTTAGCG GCGAAACTTACAAGGGCTTGAGCGAGTTGGCGTTGCATTTTTTAGGGGGTGTGTTGCGCCACGCTAGAGGGTTAGCCGCT TTCACTAACGCTTCCACTAATTCTTATAAACGCCTAATTCCTGGCTATGAAGCCCCATCTATTTTAACCTATTCGGCTAA TAACAGGAGCGCGAGCGTGCGTATCCCTTATGGGATTTCTAAAAACAGCACGAGGTTTGAATTCAGGTTTCCTGATAGCT CATCAAACCCCTACTTGGCTTTTTCAGCGATTTTAATGGCGGGCATGGATGGCGTTAAAAACAAGATCGATCCCGGCGAA GCGATGGATATTAACCTTTTCAAATTGACTTTAGATGAAATCAGAGAAAAGGGCATCAAACAAATGCCCCACACTTTAAG GAGTTCGTTAGAAGAAATGCTAGCCGATAAGCAGTATTTAAAAGAAGGTCAGGTCTTTAGCGAAGAATTTATTCAAGCCT ATCAGTCTCTTAAATTCAACGCTGAAGTGTTCCCATGGGAGAGCAAACCCCATCCTTTTGAATTTATCACCACTTATTCA TGCTAA Protein sequence : MVVRTQNSESKIKEFFEFCKENEVEFVDFRFSDIKGTWNHIAYSFGALTHGMFKEGIPFDASCFKGWQGIEHSDMILTPD LVRYFIDPFSADVSVVVFCDVYDVYKNQPYEKCPRSIAKKALQHLKDSGLGDVAYFGAENEFFIFDSIKIKDASNSQYYE VDSEEGEWNRDKSFENGVNFGHRPGKQGGYMPVPPTDTMMDIRTEIVKVLNQVGLETFVVHHEVAQAQGEVGVKFGDLVE AADNVQKLKYVVKMVAHLNGKTATFMPKPLYGDNGSGMHTHVSVWKNNENLFSGETYKGLSELALHFLGGVLRHARGLAA FTNASTNSYKRLIPGYEAPSILTYSANNRSASVRIPYGISKNSTRFEFRFPDSSSNPYLAFSAILMAGMDGVKNKIDPGE AMDINLFKLTLDEIREKGIKQMPHTLRSSLEEMLADKQYLKEGQVFSEEFIQAYQSLKFNAEVFPWESKPHPFEFITTYS C |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glnA | YP_003728749.1 | glutamine synthetase | Not tested | cag PAI | Protein | 0.0 | 99 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPSH112_04490 | YP_006227592.1 | glutamine synthetase | VFG1399 | Protein | 7e-90 | 45 |
