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Name : HPSH112_04440 (HPSH112_04440) Accession : YP_006227582.1 Strain : Helicobacter pylori Shi112 Genome accession: NC_017741 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein Cag delta Function : - COG functional category : - COG ID : - EC number : - Position : 898458 - 899903 bp Length : 1446 bp Strand : - Note : - DNA sequence : ATGTTTGGAAAACTAGCAACCGCTGTATCGCTCATAGGCTTACTAACCTCTAACACTCTTTATGCTAAAGAAATAAGTGA AGCCGATAAGGTCATTAAGGCCACTAAAGAAACTAAAGAGACCAAGAAAGAAGCTAAACGACTCAAAAAAGAAGCTAAAC AGCGCCAACAGATCCCTGATCATAAGAAACCTCAATATGCCTCTGTTGATGACACAAAAACTCAAGCGCTTTTTGATATA TACGACACCTTGAATGTGAATGATAAAAGCTTTGGGGATTGGTTTGGTAATAGCGCTTTGAAAGACAAAACCTATCTCTA CGCTATGGATCTATTGGATTACAACAACTATTTATCCATAGAAAACCCCATTATCAAAACAAGAGCGATGGGGACTTATG CGGATCTCATCATCATCACAGGTTCGTTAGAACAGGTCAATGGGTATTACAACATTCTCAAAGCGCTCAACAAACGAAAC GCTAAGTTTGTCCTAAAAATCAATGACAACCTGCCTTACGCCCAAGCGACTTTTTTGAGAGTGCCAAAAAGAAGCGATCC CAATGCCCACACGCTTGATAAGGGAGCGTCAATTGATGAGAATAAGCTTTTTGAACAACAAAAACGCGCGTATTTCAACT ACGCCAACGATGTGATCTGCAGACCCAATGATGAAGTGTGTTCGCCCCTAAGAGATGAAATGGTAGCTATGCCCACTAGC GATAGCGCTACTCAAAAACCCAATATCATTGCTCCTTATAGCTTGTATAGACTAAAAGAGACAAATAACGCCAATGAGGC TCAACCATCACCTTATGCCACTCAAACCGCTCCTGAAAACAGCAAAGAGAAGCTCATAGAAGAGCTAATCGCTAACTCCC AACTCATAGCCAATGAAGAAGAGAGGGAAAAGAAACTCTTAGCAGAAAAAGAAAAACAAGAGGCTGAATTGGCTAAATAC AAGCTCAAAGACTTAGAAAATCAAAAGAAACTAAAAGCTTTGGAAGCAGAGTTGAAAAAGAAAAATGCTAAGAAACCTAG AGTAGTGGAAGTGCCTATTTCTCCTAGAACAAGTAATCCTGATGAAACAATGAGAGTTGTCAAGGAAAAAGAAAACTATA ATGGATTGCTAGTGGATAAAGAAACCACGATCAAACGAAGCTATCAAGGGACTTTGATCAGTGAAAATTCTTACAGCAAA AAAACACCCATCAACCCTAATGACTTGAGAAGCTTAGAAGAAGAAATTAAGAGCTACTATATTAAGTCTAATGGCTTGTG TTATGCTAATGGCATTAGTCTCTATGTGAAAATCAAAAACGACCCTTATAAAGAGGGAATGTTGTGTGGTTATGAGAGCG TTCAAAATCTGCTCTCACCTCTAAAGGACAAGCTCAAGTATGACAAGCAAAAGTTACAAAAAGCGTTACTGAAAGATTTA AAGTAA Protein sequence : MFGKLATAVSLIGLLTSNTLYAKEISEADKVIKATKETKETKKEAKRLKKEAKQRQQIPDHKKPQYASVDDTKTQALFDI YDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRN AKFVLKINDNLPYAQATFLRVPKRSDPNAHTLDKGASIDENKLFEQQKRAYFNYANDVICRPNDEVCSPLRDEMVAMPTS DSATQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKY KLKDLENQKKLKALEAELKKKNAKKPRVVEVPISPRTSNPDETMRVVKEKENYNGLLVDKETTIKRSYQGTLISENSYSK KTPINPNDLRSLEEEIKSYYIKSNGLCYANGISLYVKIKNDPYKEGMLCGYESVQNLLSPLKDKLKYDKQKLQKALLKDL K |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cag3 | YP_005777266.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-168 | 99 |
| HP0522 | BAD13801.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 6e-169 | 99 |
| cag3 | YP_005774547.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 8e-169 | 99 |
| HP0522 | BAD14047.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-169 | 99 |
| HP0522 | BAD13910.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-167 | 99 |
| HP0522 | BAD13828.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-168 | 99 |
| HP0522 | BAD13938.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 8e-169 | 99 |
| HP0522 | BAD13883.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 7e-169 | 98 |
| HP0522 | BAD13855.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 4e-167 | 98 |
| cag3 | AAR03854.1 | Cag3 | Virulence | cag PAI | Protein | 1e-167 | 98 |
| HP0522 | BAD13774.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-168 | 98 |
| cag3 | YP_005775725.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 6e-167 | 98 |
| cag3 | YP_005779068.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-168 | 98 |
| HP0521 | BAD13993.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-165 | 98 |
| HP0521 | BAD13965.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-165 | 98 |
| cag-delta | AAF80193.1 | Cag-delta | Virulence | cag PAI | Protein | 5e-167 | 97 |
| cag3 | YP_003728744.1 | cag pathogenicity island protein delta | Virulence | cag PAI | Protein | 6e-166 | 97 |
| cag3 | AAR03914.1 | Cag3 | Virulence | cag PAI | Protein | 2e-165 | 97 |
| HP0522 | NP_207318.1 | cag pathogenicity island protein (cag3) | Virulence | cag PAI | Protein | 2e-166 | 97 |
| cag3 | AGC69793.1 | cag pathogenicity island protein 3 | Virulence | cag PAI | Protein | 4e-166 | 97 |
| HP0522 | BAD14021.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 7e-167 | 97 |
| cag3 | AAR03885.1 | Cag3 | Virulence | cag PAI | Protein | 8e-165 | 97 |
| cag3 | AAR03945.1 | Cag3 | Virulence | cag PAI | Protein | 5e-167 | 97 |
| orf8 | NP_223189.1 | cag island protein | Virulence | cag PAI | Protein | 6e-163 | 94 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPSH112_04440 | YP_006227582.1 | cag pathogenicity island protein Cag delta | VFG0282 | Protein | 8e-167 | 97 |
