Gene Information

Name : HPSH112_04435 (HPSH112_04435)
Accession : YP_006227581.1
Strain : Helicobacter pylori Shi112
Genome accession: NC_017741
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cag4)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 897939 - 898448 bp
Length : 510 bp
Strand : -
Note : -

DNA sequence : 
TTGTTTGAGAAATGGATTGGTCTGACTTTACTTCTTAATTCCTTAGCCTATCCATGCCAAAAAGTAACCATTAGTTTCAA
GCAGTATGAAAATCTTATCCATATTCACCAAAAAGGCTGCGACAATGAAGTGGTGTGCAGAACGCTCATCTCTATCGCCT
TATTGGAAAGTTCTTTAGGGTTGAACAACAAGCGCGAAATTTCCCTAAAAGACACTTCCTATTCCATGTTTCACATCACT
TTGAACACCGCTAAAAAATTCTACCCCACCTATTCTAAAACGCTTCTCAAATACAAATTGCTCAATGATGTGGATTTTGC
GATTTCGTTGGCTAAAAGAATTTTGAAAGAAAATTTTGATTACTACAAACAAAAACACCCTAATAAAAGCGTGTATCAAA
TAGTAGAAATGGCAGTAGGCGCTTACAATGGGGGAATGAAACACAACCCTAATGGCGCTTACGTGAAGAGATTTCGTTGC
ATTTATTCTCAGGTGCGATATAACGGGTAG

Protein sequence : 
MFEKWIGLTLLLNSLAYPCQKVTISFKQYENLIHIHQKGCDNEVVCRTLISIALLESSLGLNNKREISLKDTSYSMFHIT
LNTAKKFYPTYSKTLLKYKLLNDVDFAISLAKRILKENFDYYKQKHPNKSVYQIVEMAVGAYNGGMKHNPNGAYVKRFRC
IYSQVRYNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 1e-67 99
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-68 99
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-66 98
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 2e-66 97
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 1e-66 97
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-67 97
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-66 96
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-65 96
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-66 96
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 2e-65 96
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-65 95
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-65 95
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 1e-65 95
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 3e-65 94
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-45 94
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 7e-64 93
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 6e-61 93
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 4e-65 93
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-64 92
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 1e-59 92
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 4e-63 92
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 2e-63 92
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 1e-63 92
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-63 91

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH112_04435 YP_006227581.1 cag pathogenicity island protein (cag4) VFG0283 Protein 1e-65 93