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Name : HPSH112_04410 (HPSH112_04410) Accession : YP_006227576.1 Strain : Helicobacter pylori Shi112 Genome accession: NC_017741 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein (cag7) Function : - COG functional category : - COG ID : - EC number : - Position : 888295 - 893838 bp Length : 5544 bp Strand : + Note : COG2948 Type IV secretory pathway, VirB10 components DNA sequence : ATGAATGAAGAAAACGATAAACTTGAAACTTCTAAAAAAACCCAACAACATTCACCCCAAGATTTATCCAATGAAGAAAC AATAAAAGCCAATCACTTTGAAGATTCTTCAAAAGAATCCAAAAAAAGCTCAGATCATCATCTTGACAACTCCACAGAAA CTAAAACCAATTTTGATGGAGAAAAGTCAGAAGAAACCCAAACTCAAATGGATTCTGGAGGTAATGAAACTTCAGAATCT AGCAATCTAGCAGACAAGTTATTCAAAAAAGCCAGAAAATTAGTTGATAATAAAAAACCTTTCACTCAGCAAAAGAATTT AGATGAAGAAATCCAAGAACCGAACGAAGAAGACGATCAAGAAAATAATGGGTATCAAGAAGAAATTCAAATGGATTTAA TTGATGATGAAACTTCTAAAAAAACCCAACAACATTCACCCCAAGATTTATCCAATGAAGAAACAATAAAAGCCAATCAC TTTGAAGATTCTTCAAAAGAATCCAAAAAAAGCTCAGATCATCATCTTGACAACTCCACAGAAACTAAAACCAATTTTGA TGGAGAAAAGTCAGAAGAAACCCAAACTCAAATGGATTCTGGAGGTAATGAAACTTCAGAATCTAGCAATCTAGCAGACA AGTTATTCAAAAAAGCCAGAAAATTAGTTGACAATAAAAGACCTTTCACTCAGCAAAAGAATTTAGATGAAGAAATCCAA GAACCAAACGAAGAATACGATCAAGAAAATAATGGGTATCAAGAAGAAACTCAAATGGACTTAATTGATGATGAAACTTC TAAAAAAACCCAACAACATTCACCCCAAGATTTATCCAATGAAGAAACAATAAAAGCCAATCACTTTGAAGATTCTTCAA AAGAATCCAAAGAAAACTCAGATCATCATCTTGACAACTCCACAGAAACTAAAACCAATTTTGATGGAGAAAAGTCAGAA GAAATAACTAACGATTCTAACGATCAAGAGATTATCAAAGGAAGCAAAAAGAAATACATTATTGGTGGCATTGTAGTCGC TGTTCTTATCGTGATTATTTTATTTTCTAGAAGCATTTTTCACTATTTCATACCTTTGGAAGATAAAAGCTCTCGTTTTA GCAAAGACAGGAATCTTTATGTCAATGATGAAATCCAAATAAGGCAAGAGTATAACCGATTGCTGAAAGAACGGAATGAA AAAGGCAATATGATCGATAAGAATCTTTTCTTCAATGACGATCCCAATAGAACCTTATACAACTATTTGAATATTGCAGA AATTGAGGACAAAAACCCATTGAAGGCCTTTTATGAATGTATTAGTAATGGTGGAAACTATGAAGAATGTTTGAAGCTTA TCAAAGACAAAAAACTTCAAGATCAAATGAAAAAGACTTTAGAGGCTTATAATGACTGCATCAAAAATGCCAAAACTGAA GAAGAAAGGATCAAGTGTTTAGATTTAATCAAAGATGAAAACCTGAAAAAAAGCTTACTGAACCAACAAAAAGTTCAAGT GGCGCTAGATTGTTTGAAAAACGCTAAAACCGATGAAGAACGAAACGAGTGCCTAAAACTCATAAATGACCCTGAGATTA GAGAGAAATTCCGTAAGGAATTAGAGCTTCAAAAAGAGCTTCAAGAGTATAAGGATTGTATCAAAAACGCCAAAACAGAA GCTGAGAAAAACGAATGCTTGAAAGGCTTGTCTAAGGAAGCTATAGAAAGATTGAAACAGCAAGCACTAGATTGTTTGAA AAACGCTAAAACCGATGAAGAACGAAACGAGTGCTTGAAAAATATTCCCCAAGACTTGCAAAAAGAACTACTGGCTGATA TGAGCGTCAAGGCTTACAAGGATTGCGTATCAAAAGCTAGAAATGAAGAAGAAAGAAAAGCTTGTGAGAAATTGCTTACC CCTGAAGCGAAAAAAAAGTTAGAACAACAGGTTCTAGATTGTTTGAAAAACGCTAAAACCGATGAAGAACGAAAAAAGTG TTTGAAAGATCTCCCTAAAGACTTACAAAGCGATATTTTAGCTAAAGAGAGTCTTAAAGCTTATAAAGACTGCGTATCTC AAGCTAGAAATGAAGAAGAAAGAAAATCTTGTGAGAAATTACTCACGCCTGAAGCGAAAAAACTTTTAGAAGAAGAAGCC AAAGAGAGCGTTAAAGCTTATTTGGATTGCGTATCTCAAGCCAAAACTGAAGCTGAGAAAAAAGAATGCGAGAAATTACT CACGCCTGAAGCGAAAAAAAAGTTAGAAGAAGCTAAAAAAAGCGTTAAGGCTTATTTGGACTGCGTTTCAAGAGCTAGGA ATGAAAAAGAGAAACAAGAATGCGAGAAATTACTCACGCCTGAAGCGAAAAAGCTTTTAGAGCAACAAGCGCTAGATTGT TTGAAAAACGCTAAAACCGAAGCTGAGAAAAAAAGGTGTGTCAAAGATCTCCCTAAAGACTTGCAGAAAAAGGTTTTAGC CAAAGAGAGTCTTAAGGTTTATTTGGATTGCGTATCTCAAGCCAAAACTGAAGCTGAGAAAAAAGAATGCGAGAAATTGC TCACCCCTGAAGCGAAAAAACTTTTAGAAGAAGCCAAAGAGAGTCTTAAAGCTTATAAAGACTGCGTTTCAAGAGCTAGG AATGAAAAAGAGAAACAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAAAAAACTCTTAGAGCAACAAGCGCTAGATTG TTTGAAAAACGCTAAAACCGAAGCTGAGAAAAAAAGGTGTGTCAAAGATCTCCCTAAAGACTTGCAGAAAAAGGTTTTAG CCAAAGAGAGTCTTAAGGTTTATTTGGATTGCGTATCTCAAGCCAAAACTGAAGCTGAGAAAAAAGAATGCGAGAAATTG CTCACCCCTGAAGCGAAAAAACTTTTAGAAGAAGCCAAAGAGAGTCTTAAAGCTTATAAAGACTGCCTCTCTCAAGCTAG AAATGAAGAAGAAAGAAAAGCTTGTGAGAAATTGCTCACCCCTGAAGCGAGAAAACTCTTAGAGCAAGAAGTTAAGAAGA GCGTTAAGGCTTATTTGGATTGCGTATCTCAAGCCAAAACTGAAGCTGAGAAAAAAGAATGCGAGAAATTACTCACGCCT GAAGCGAGAAAGCTTTTAGAGCAACAAGCGCTAGATTGTTTGAAAAACGCTAAAACCGAAGCTGAGAAAAAAAGGTGTGT CAAAGATCTCCCTAAAGACTTGCAGAAAAAGGTTTTAGCTAAAGAGAGCGTTAAGGCTTATTTGGACTGCGTTTCAAGAG CTAGGAATGAAAAAGAGAAACAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAAAAAACTTTTAGAAGAAGCTAAAGAG AGTCTTAAAGCTTATAAAGACTGCGTATCTCAAGCTAGAAATGAAGAAGAAAGAAAAGCTTGTGAGAAATTACTCACGCC TGAAGCGAGAAAACTTTTAGAGCAAGAAGTTAAGAAGAGCGTTAAGGCTTATTTGGACTGCGTTTCAAGAGCTAGGAATG AAAAAGAGAAACAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAGAAAATTTTTAGCGAAGCAAGCACTAAGTTGTTTG GAAAAAGCTAGAAATGAAGAAGAAAGAAAAGCATGTCTTAAAAATATCCCTAAAGACTTACAGAAAAATGTTTTAGCTAA AGAGAGTCTTAAAGCTTATAAAGACTGCCTCTCTCAAGCTAGAAATGAAGAAGAAAGAAAAGCTTGTGAGAAATTGCTCA CCCCTGAAGCGAGAAAACTCTTAGAGCAAGAAGTTAAGAAGAGCGTTAAGGCTTATTTGGACTGCGTTTCAAGAGCTAGG AATGAAAAAGAGAAACAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAGAAAATTTTTAGCGAAAGAGCTCCAACAAAA AGATAAAGCGATCAAAGATTGCTTGAAAAACGCCGATCCTAACGACAGAGCAGCTATTATGAAGTGTTTGGATGGTTTGA GCGATGAAGAGAAGCTCAAATACCTGCAAGAAGCTAGAGAAAAGGCTGTCTTGGATTGTTTGAAAACGGCTAGGAGCGAT GAAGAAAAAAGGAAATGTCAAAACCTTTATAGCGATTTGATCCAAGAAATCCAAAATAAAAGGACACAAAGCAAACAAAA TCAATTGAGTAAAACAGAAAGATTGCATCAAGCAAGCGAGTGCTTGGATAACTTAGATGACCCTACTGATCAAGAAGCCA TAGAGCAATGTTTAGAAGGCTTGAGCGATAGTGAAAGAGCGCTAATTCTAGGAATTAAACGACAAGCTGATGAAGTGGAT CTGATTTATAGCGATCTAAGAAACCGCAAAACCTTTGATAACATGGCGGCTAAAGGTTATCCATTGTTGCCAATGGATTT CAAAAATGGCGGCGATATTGCCACTATTAACGCCACCAATGTTGATGCGGACAAAATAGCTAGCGATAATCCTATTTATG CTTCCATAGAGCCTGACATTACTAAGCAATACGAAACAGAAAAAACCATTAAGGATAAGAATTTAGAAGCTAAATTAGCT AAGGCTTTAGGTGGCAATAAAAAAGATGACGATAAAGAAAAAAGTAAAAAATCCACAGCAGAAGCTAGAGTAGAAAGCAA TAAGATAGACAAAGATGTCGCAGAAACTGCCAAAAATATCAGTGAAATCGCTCTTAAGAACAAAAAAGAAAAGAATGGGG AATTTGTAGATGAAAATGGTAATCCCATTGATGACAAAAAGAAAACAGAAAAACAAGATGAAACAAGCCCTGTCAAACAG GCCTTTATAGGCAAGAGTGATCCCACATTTGTTTTAGCGCAATACACCCCTATTGAAATCACTCTGACTTCTAAAGTAGA TGCCACTCTCACAGGTATAGTGAGTGGGGTTGTGGCCAAAGATGTATGGAACATGAACGGCACTATGATCTTATTAGACA AAGGCACTAAGGTGTATGGGAATTATCAAAGCGTGAAAGGTGGCACACCCATTATGACACGCTTAATGATAGTCTTTACT AAAGCCATTACGCCTGATGGTGTGATAATACCTCTAGCAAACGCTCAAGCAGCAGGCATGCTGGGTGAAGCAGGGGTAGA TGGCTATGTGAATAATCACTTTATGAAGCGCATAGGTTTTGCTGTGATAGCAAGCGTGGTTAATAGCTTCTTGCAAACTG CGCCTATCATAGCTCTAGATAAACTCATAGGCCTTGGCAAAGGTAGAAGTGAAAGGACACCTGAATTTAATTACGCTTTG GGTCAAGCTATCAATGGTAGTATGCAAAGTTCAGCTCAGATGTCTAATCAAATTCTAGGGCAACTGATGAATATCCCCCC AAGTTTTTACAAAAATGAGGGCGATAGTATTAAAATTCTCACAATGGACGATATTGATTTTAGTGGCGTATATGATGTTA AAATTACCAACAAATCTGTGGTAGATGAAATTATCAAACAAAGCACTAAAACTTTGTCTAGAGAGCATGAAGAAATCACC ACAAGCCCCAAAGGTGGCAATTAA Protein sequence : MNEENDKLETSKKTQQHSPQDLSNEETIKANHFEDSSKESKKSSDHHLDNSTETKTNFDGEKSEETQTQMDSGGNETSES SNLADKLFKKARKLVDNKKPFTQQKNLDEEIQEPNEEDDQENNGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANH FEDSSKESKKSSDHHLDNSTETKTNFDGEKSEETQTQMDSGGNETSESSNLADKLFKKARKLVDNKRPFTQQKNLDEEIQ EPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFEDSSKESKENSDHHLDNSTETKTNFDGEKSE EITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNE KGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPLKAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTE EERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTE AEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSKARNEEERKACEKLLT PEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQARNEEERKSCEKLLTPEAKKLLEEEA KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEKQECEKLLTPEAKKLLEQQALDC LKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKVYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSRAR NEKEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKVYLDCVSQAKTEAEKKECEKL LTPEAKKLLEEAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTP EARKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKQECEKLLTPEAKKLLEEAKE SLKAYKDCVSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQALSCL EKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRAR NEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARSD EEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVD LIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLA KALGGNKKDDDKEKSKKSTAEARVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKTEKQDETSPVKQ AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFT KAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYAL GQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT TSPKGGN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HP0527 | BAD13943.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 92 |
| HP0527 | BAD13998.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 91 |
| cagY | AGC69789.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 90 |
| cagY | YP_005779063.1 | cag island protein | Virulence | cag PAI | Protein | 0.0 | 89 |
| HP0527 | BAD13779.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 89 |
| cagY | AGC69785.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 87 |
| cagY | AGC69788.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 87 |
| cag-Y | AAF80198.1 | Cag-Y | Virulence | cag PAI | Protein | 0.0 | 86 |
| cagY | YP_005777271.1 | cag pathogenicity island protein Y VirB10-like protein | Virulence | cag PAI | Protein | 0.0 | 85 |
| HP0527 | BAD14052.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 85 |
| cagY | YP_005774542.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 84 |
| orf13/14 | NP_223194.1 | cag island protein | Virulence | cag PAI | Protein | 0.0 | 83 |
| cagY | YP_005775730.1 | cag pathogenicity island protein Y VirB10-like protein | Virulence | cag PAI | Protein | 0.0 | 83 |
| HP0527 | BAD13860.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 83 |
| HP0527 | BAD13970.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 81 |
| HP0527 | BAD13888.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 79 |
