Gene Information

Name : HPSH112_04400 (HPSH112_04400)
Accession : YP_006227574.1
Strain : Helicobacter pylori Shi112
Genome accession: NC_017741
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagW
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 885052 - 886659 bp
Length : 1608 bp
Strand : +
Note : -

DNA sequence : 
ATGTTTAATATCAAAAGGACTTTTTTAATAACGATCATAAGTTTTTTTCTCATTGTTCCTAATTGGTTGAAAGCTATTGA
TTTGCCCATTGTTTCAAATCTCAAAATTTACCAAACAGTTTATTGCATGCTGATACCGAGTTATGTTTTAACCAACAAAA
GTTTTGCAGATATTTTGACAGGTTATACATCTATTGGTGCATCAGGGAGTGGAAAGAGTTCAGGGCAGGGTGTGATCGAA
GCGCTTAGTGCACCATTAGCTACAAGTTTAGCCGCTAGCAATCTAGTGAAATATTTGAATACTTTAGGTCCTTTATGGGG
ATCGGCGTGGGCAAGTGTTGCTACAGCTATACAAGGTTTTGCTCTAACCCCATCAGGTGGTTGCAATTTTGGTTGGAACG
CATTGATAAATAAAAACATAGATGTATCCATGGATAGCATGCTAGACAATTTGAGCAACAAGATTCGGAATTTTACCAAA
GGCGGTGTTGAGGACAATGTGAAAGGCAATGTTCTTTTACAAATAATTGGCTCAATAACCGCTCAAGTTTCTACGAATAT
TACAGCTGATGGTTTAATTTGGCTGATTGGCAAAGAATTCACTGCAAATAAACTGCAAAACAACACTACAGCCATGCTTG
CTTTTGCCGCACTAGAATCTATTGTCAAAGGAGCGGACGTTGCTGTTCTTCCTGCATATGGTGTAGTCAATCTGCCTGAT
ATTATCATAGGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTAATTTATATTGTTTTTGGGATTTTTGTTTTTATTTC
TTTTATGAAATTGAGAGATATTTCAAATAACATTCAGATTAACATAGGTTTTGAATACATGCGATTTGTTGGGGGGACAT
TATTCAAAATGGCGATGGTCTCTTTTATCGCCTATGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCCATTTATTTT
GGTTTAGCAGGCGCTTTTGGGCTGAATCAAACTCTTTTTTGGGCTTTAGATTTAGTGCTGAATTACACTGTTAATTCAAT
TTTACCTGCGGTAAGAGCTGTTTTTTCTAATGTTGGCAACAACGCTCCTAGTTTATTACAAGGCTTGCAAGTTGCAGGTA
TTTCTTTATTCGCTATTTTTATGCAAGTAACTGTCATTATGAGAATAAGCACTGTTGTTGTGAAACCTTTGATAGCGGGG
GCTTTTAGCGGTATTGTGTTCCCTATTGCGGTATGTTTGATCGTGCTAGATTGGTTCAAAGATTCTATGAAAAACATATT
GATATGGTTTATTAATAATTTGTTTATCTTGGTTCTAGCTATTCCTATTTTGCTCTTTGGTGTTTTGGCATTATTGGCAT
TCAATTTGACCATAACGCCCTCTGCTGCTATACAAAACATCAATCAAGGGGGACTGGGTATCGATTCGACTCTTGCGAGT
TTGATCACTTTATTTATTTTAAAAGGTTTCATAGAGACGATTATTGAGAGTGTCAATGCGATCGTTAATACCATTTTCAG
TTCTGTCTCTATGGATGGTAGCAGAATGGATAGAGAAAGAGATGCCTTAATGGTGGGAAAAGTTGGTGGATCTATGTTTA
AAAGATAA

Protein sequence : 
MFNIKRTFLITIISFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGASGSGKSSGQGVIE
ALSAPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSGGCNFGWNALINKNIDVSMDSMLDNLSNKIRNFTK
GGVEDNVKGNVLLQIIGSITAQVSTNITADGLIWLIGKEFTANKLQNNTTAMLAFAALESIVKGADVAVLPAYGVVNLPD
IIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNNIQINIGFEYMRFVGGTLFKMAMVSFIAYAGFGYLYKISYSIYF
GLAGAFGLNQTLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTVIMRISTVVVKPLIAG
AFSGIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSAAIQNINQGGLGIDSTLAS
LITLFILKGFIETIIESVNAIVNTIFSSVSMDGSRMDRERDALMVGKVGGSMFKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0529 BAD13808.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03922.1 Cag9 Virulence cag PAI Protein 0.0 98
HP0529 NP_207325.1 cag pathogenicity island protein (cag9) Virulence cag PAI Protein 0.0 98
orf16 NP_223196.1 cag island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13781.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005774540.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD14028.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03953.1 Cag9 Virulence cag PAI Protein 0.0 98
HP0529 BAD13862.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005779061.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03864.1 Cag9 Virulence cag PAI Protein 0.0 98
cagW YP_005775732.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13835.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03892.1 Cag9 Virulence cag PAI Protein 0.0 98
cagW YP_003728735.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 98
HP0529 BAD14000.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD13945.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD13972.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
cagW YP_005777273.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD14054.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD13890.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD13917.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
cag-W AAF80200.1 Cag-W Virulence cag PAI Protein 0.0 97
cagW AGC69796.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH112_04400 YP_006227574.1 cag pathogenicity island protein CagW VFG0289 Protein 0.0 98