Gene Information

Name : HPSH112_04395 (HPSH112_04395)
Accession : YP_006227573.1
Strain : Helicobacter pylori Shi112
Genome accession: NC_017741
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagV
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 884289 - 885047 bp
Length : 759 bp
Strand : +
Note : COG3736 Type IV secretory pathway, component VirB8

DNA sequence : 
ATGTTAGGGAAAAAAAACGAGGAAGTCTTGATTGATGAAAATTTAGTTGGGGGTGTGATAGCCCTTGATAGATTGGCAAA
ACTCAATAAAGCCAATAGGACTTTCAAAAGGGCTTTTTATCTCTCTATGGCACTCAATATCGCTACTGTAACGAGTATTG
TGATGATGATGCCTTTGAAGAAAACAGATATATTTGTTTATGGCATTGATCGATATACAGGAGAATTTAAAATTGTCAAA
CGCTCCGATGCTAGGCAAATTGTCAATTCTGAAGCTGTTGTGGATAGTGCAACTTCAAAATTTGTTTCATTGCTGTTTGG
TTATAGCAAAAATTCTTTGAGGGATCGCAAGGATCAACTAATGCAGTATTGCGATGTGAGTTTCCAAACCCAAGCAATGA
GAATGTTCAATGAAAATATCAGACAATTTGTAGATAAAGTCCGAGCAGAAGCTATCATTAGCTCCAACATACGAAGAGAA
AAAGTCAAAAATAGTCCCTTAACGAGATTAACATTTTTCATTACCATTAAAATCACACCTGATACAATGGAAAATTATGA
ATATATTACTAAAAAAGAAGTAACTATTTATTATGATTTTGCCAGTGGTAACTCTTCTCAAGAAAATCTTATCATCAATC
CTTTTGGCTTCAAAGTGTTTGACATTCAAATCACAGATTTACAAAACGAACAGACGGTAAGCGAAATTTTGAGAAAGATT
AAAGAAGTGGAATCAAAAAATAAGGCATTAAAGAAATAA

Protein sequence : 
MLGKKNEEVLIDENLVGGVIALDRLAKLNKANRTFKRAFYLSMALNIATVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVK
RSDARQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQFVDKVRAEAIISSNIRRE
KVKNSPLTRLTFFITIKITPDTMENYEYITKKEVTIYYDFASGNSSQENLIINPFGFKVFDIQITDLQNEQTVSEILRKI
KEVESKNKALKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag10 AAR03893.1 Cag10 Virulence cag PAI Protein 2e-112 99
HP0530 BAD14001.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 99
HP0530 BAD13782.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-112 99
cagV YP_005779060.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 99
HP0530 BAD13809.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-112 99
cag10 AAR03865.1 Cag10 Virulence cag PAI Protein 3e-112 98
cagV YP_005777274.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-112 98
cag10 AAR03923.1 Cag10 Virulence cag PAI Protein 3e-112 98
orf17 NP_223197.1 cag island protein Virulence cag PAI Protein 6e-112 98
HP0530 BAD13836.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-112 98
HP0530 NP_207326.1 cag pathogenicity island protein (cag10) Virulence cag PAI Protein 5e-112 98
HP0530 BAD14055.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-112 98
cagV YP_003728734.1 cag pathogenicity island protein V Virulence cag PAI Protein 4e-112 98
HP0530 BAD13863.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 98
HP0530 BAD14029.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-112 98
cagV YP_005775733.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 98
cag-V AAF80201.1 Cag-V Virulence cag PAI Protein 3e-112 98
HP0530 BAD13946.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-112 98
cagV AGC69797.1 cag pathogenicity island protein V Virulence cag PAI Protein 3e-112 98
cagV YP_005774539.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-112 98
HP0530 BAD13891.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-112 97
HP0530 BAD13918.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-112 97
HP0530 BAD13973.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-111 97
cag10 AAR03954.1 Cag10 Virulence cag PAI Protein 9e-112 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH112_04395 YP_006227573.1 cag pathogenicity island protein CagV VFG0290 Protein 2e-112 98