Gene Information

Name : HPSH112_04335 (HPSH112_04335)
Accession : YP_006227561.1
Strain : Helicobacter pylori Shi112
Genome accession: NC_017741
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagI
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 874662 - 875801 bp
Length : 1140 bp
Strand : +
Note : -

DNA sequence : 
GTGAAGTATTTTTTAAGCATATTTTCTTTCTTAACTTTTTTGTTTCTGAATGGTGGAGAGGCAGTAATAACGCTTGAACC
TGCCTTAAAAGCCATTCAAGCGGATGCACAAGCCAAACAAAAAACCGCTCAAGCCGAATTAAAAGCCATAGAGGCTCAAT
CTAATGCCAAAGAAAAAGCCATTCAAGCGCAAATAGAGGGAGAATTGAGAACTCAGCTTGCAACTATGAGCGCTATGTTA
AAAGGGGCTAATGGTGTTATTAATGGTGTCAATGGCATGACAGGGGGGTTTTTTGCAGGTTCAGACATCTTGCTTGGCAT
CATGCAAGGGTATTCAAGCGCGCTTAGCGCATTGGGGGGAAATGTCAAAATGATCGTAGAAAAACAAAAAATTAATACCC
AAACAGAAATCCAAAACATGCAAATCGCGCTCCAAAAAAATAACGAAATAATCAAGCTCAAAATGAACCAGCAAAACGCT
CTCTTAGAAGCGTTAAAAAACAGCTTTGAACCGAGCGTTACCCTAAAAACACAAATGGAAATGCTTTCTCAAGCTCTAGG
AAGTTCTTCTGACAACACTAAATACATCGCTTACAATACGATTGGTATCAAGGCGTTTGAAGAAACTTTAAAAGGTTTTG
AAACATGGTTGGAAGTGGCTATGCAAAAAGCGACCCTTATTGACTACAATTCCCTAACAGGTCAGGCTTTGTTTCAAAGC
GCCATCTACGAGCCTGCTCTTAGTTTTTTTTCAAGCATGGGTGCACCATTTGGAATCATTGAAACATTTACTCTGGCACC
CACAAAATGCCCCTATCTTGATGGGCTAAAAATTTCAGCATGCCTTATGGAACAGGTTATTCAGAATTACAGAAAGATTG
TAGCCCTTATTCAAAATAAACTGAATGATGCAGATTTTCAAAATATCGCTTATTTGAATGGGATCAATGAAGAAATCAAA
ACCTTAAAAGGATCAGTAGATTTGAATGCGCTCATAGAAGTTGCTATCTTAAACGCAGAAAACCATTTAAACTATATAGA
GAATCTTGAAAAAAAAGCCGACCTTTGGGAAGAACAACTGAAATTAGAGAGAGAAACGACAGCAAGAAACATTGCTAGCT
CTAAAGTTATTGTCAAATGA

Protein sequence : 
MKYFLSIFSFLTFLFLNGGEAVITLEPALKAIQADAQAKQKTAQAELKAIEAQSNAKEKAIQAQIEGELRTQLATMSAML
KGANGVINGVNGMTGGFFAGSDILLGIMQGYSSALSALGGNVKMIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNA
LLEALKNSFEPSVTLKTQMEMLSQALGSSSDNTKYIAYNTIGIKAFEETLKGFETWLEVAMQKATLIDYNSLTGQALFQS
AIYEPALSFFSSMGAPFGIIETFTLAPTKCPYLDGLKISACLMEQVIQNYRKIVALIQNKLNDADFQNIAYLNGINEEIK
TLKGSVDLNALIEVAILNAENHLNYIENLEKKADLWEEQLKLERETTARNIASSKVIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0540 BAD13956.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-149 98
cagI YP_005774531.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-148 97
cagI AGC69802.1 cag pathogenicity island protein I Virulence cag PAI Protein 6e-147 97
cagI YP_005777281.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-147 97
cagI AAF80208.1 CagI Virulence cag PAI Protein 6e-147 97
cagI NP_223206.1 cag island protein Virulence cag PAI Protein 6e-147 97
cag19 AAR03902.1 Cag19 Virulence cag PAI Protein 5e-147 97
cagI YP_003728724.1 cag pathogenicity island protein I Virulence cag PAI Protein 4e-147 97
HP0540 BAD13873.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-147 97
cagI YP_005775740.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-147 97
HP0540 BAD13792.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-147 97
cagI YP_005779053.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-147 97
cag19 AAR03963.1 Cag19 Virulence cag PAI Protein 2e-147 97
HP0540 NP_207336.1 cag pathogenicity island protein (cag19) Virulence cag PAI Protein 2e-147 97
HP0540 BAD14038.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-148 97
HP0540 BAD14065.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-146 96
HP0540 BAD14011.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-146 96
cag19 AAR03932.1 Cag19 Virulence cag PAI Protein 2e-146 96
HP0540 BAD13819.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-146 96
HP0540 BAD13928.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-146 96
HP0540 BAD13901.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-147 96
HP0540 BAD13846.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-147 96
cag19 AAR03874.1 Cag19 Virulence cag PAI Protein 7e-147 96
HP0540 BAD13983.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-143 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH112_04335 YP_006227561.1 cag pathogenicity island protein CagI VFG0299 Protein 6e-148 97