Gene Information

Name : HPSH112_04330 (HPSH112_04330)
Accession : YP_006227560.1
Strain : Helicobacter pylori Shi112
Genome accession: NC_017741
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 873539 - 874651 bp
Length : 1113 bp
Strand : +
Note : COG0249 Mismatch repair ATPase (MutS family)

DNA sequence : 
ATGGCAGGCACACAAGCTATATATGAATCATCTTCTGCAAGCTTCTTATCGCAAGTCTCATCAGTCATCTCAAGCACAAG
TGGTGTTGCAGGGCCATTTGCAGGAATAGTGGCGGGTGCTATGACAGCAGCGATTATTCCTATTGTTGTGGCATTTACTA
ATCCGCAAATGACCGCTATCATGACCCAATACAATCAGAGCATCGCTGAAGCCGTAAGCATGCCTATGAAAGCCGCTAAC
CAACAATACAACCAATTGTATCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAACAATATCTTAAATATTAGCAAATT
AACAGGGGAATTTAACGCGCAAGGCAACACGCAAGGCGCGCAAATTGGTGCTGTTAATAGTCAGATTGCAAGCATTTTAG
CGAGTAACACTACCCCTAAAAATCCCAGTGCTATTGAAGCTTATGCGACGAATCAAATCGCTGTTCCTAGCGTGCCAACA
ACGGTTGAAATGATGAGCGGTATCTTAGGCAATATTACAAGTGCAACACCAAAATACGCCCTAGCCCTACAAGAGCAACT
GCGTTCTCAAGCAAGCAACAGCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTGGGTGCGCTTGCTA
GCTCATCAAAAGTGTTTTTTAGTTGCATGCAAATTTCTATGACTCCTATGAGTGTCTCTATGCCCACTGTTTATGCCAAA
TACCAAGCGTTAGCCGCTAATGCCCTAACTTCAGGCGTTAATCCTATGACCACTCCTGCATGCCCTACTGGGGACAAAGT
TCTTGTCGTTTATTGCTATGCTGAAAAAGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCA
ATTTGTTGCAAAACGCTTCTCAAATGATACTTAATCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCT
AACATAAGCTCGCTATATAACTACAATATAGTAGCGAATAAATCTTTTTTGAAATCACATCTGACTTATCTTGATTACAT
CAAAGACAAACTTAAGGGGCAAAAAGATAGCTACCTAACAGAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MAGTQAIYESSSASFLSQVSSVISSTSGVAGPFAGIVAGAMTAAIIPIVVAFTNPQMTAIMTQYNQSIAEAVSMPMKAAN
QQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQIGAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPT
TVEMMSGILGNITSATPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALASSSKVFFSCMQISMTPMSVSMPTVYAK
YQALAANALTSGVNPMTTPACPTGDKVLVVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAIS
NISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-154 98
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-154 98
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 2e-153 98
cagH AAC44699.1 CagH Virulence cag PAI Protein 8e-155 98
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-153 98
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-153 97
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 1e-152 97
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 8e-153 97
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-152 97
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 4e-153 97
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 1e-152 97
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-153 97
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-153 97
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 4e-152 97
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-153 97
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-152 97
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 2e-152 97
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 3e-153 97
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 1e-152 97
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 1e-152 97
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-151 96
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 6e-152 96
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 7e-152 96
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-151 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH112_04330 YP_006227560.1 cag island protein VFG0300 Protein 3e-152 96