Gene Information

Name : HPSH112_04320 (HPSH112_04320)
Accession : YP_006227558.1
Strain : Helicobacter pylori Shi112
Genome accession: NC_017741
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 872245 - 873051 bp
Length : 807 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACAAAGTTTGCGTGAACAAAAATTATTGAAAATTTTAGAAAATGATGTCTTGACGATTTTGGATAGTTTTTCTAA
TTATCTTTTTGAACTGAAAGAAGAATTGGACTTCATAGAAGAAGAAATGGAAGGCGAAATCACTGAACAAAACCTTACCA
CTCTTTATGATTTTTCTAATTTCTTAGAAGACCATGTCAATGTGTTTTATGAGAATGTTTTAAATATAGATGATGTCAAA
GCAGAACACCTTTATTCAGGTCTCATAGATAGTCTCAATGCTAATCTTCACTTTGTCAAGTCATTTCTCAGTAATCAGGA
TTTAGACTTCCGCTTTTTTAAAGAAATAAACGATGGGCAAGATCCCCAAAAAACACTATCAAGATTGATTCCTCTTCAAA
GTGGGAAGAATGACGCAAGCTCGTTTAAAGAAAATAATTCTTTTGTATCATTAGTTTATGTTTATGTTTACTCCATGCTA
GAAACTATCATGCAGTCGTATAGGATTCTCAGATTACTAGAAAAACCTATCAATAACAACATAAACGAGGATATGCAGAG
CGATATAGAGAATTTTTTTGTTCAAGCGAATTTTTTAGAATACTATGTTCAGAACAAAATATACCCAACAAGTCATGCCT
ATGACTTCACGCATTTAATCATGGACTCCATTGTTCCTAATTGGATTCAGGTTGATATGAGCGTTGAAGCTAAAAAGAAA
GAGCTTTTTGAAAAATATTTTCAAAACATTGATGAAGTAACAAACAAAATGCTCGATCAAAAAGATCAAAACAAAAATAG
CGATTGA

Protein sequence : 
MKQSLREQKLLKILENDVLTILDSFSNYLFELKEELDFIEEEMEGEITEQNLTTLYDFSNFLEDHVNVFYENVLNIDDVK
AEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQDPQKTLSRLIPLQSGKNDASSFKENNSFVSLVYVYVYSML
ETIMQSYRILRLLEKPINNNINEDMQSDIENFFVQANFLEYYVQNKIYPTSHAYDFTHLIMDSIVPNWIQVDMSVEAKKK
ELFEKYFQNIDEVTNKMLDQKDQNKNSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0543 BAD13822.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-99 98
cagF YP_005777284.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-99 98
HP0543 BAD13904.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-99 98
HP0543 BAD13959.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-99 98
HP0543 BAD14014.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-99 97
cagF YP_005775743.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-99 97
HP0543 BAD14068.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-99 97
cagF YP_005779050.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-99 97
HP0543 BAD13849.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-99 97
HP0543 BAD13795.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-99 97
HP0543 BAD13876.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-99 97
cagF AAN34515.1 putative outer membrane protein CagF Virulence cag PAI Protein 4e-99 96
cagF NP_223209.1 cag island protein Virulence cag PAI Protein 7e-98 96
cag22 AAR03966.1 Cag22 Virulence cag PAI Protein 3e-99 96
cagF YP_005774528.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-99 96
cagF AAN34510.1 putative outer membrane protein CagF Virulence cag PAI Protein 2e-98 96
cag22 AAR03905.1 Cag22 Virulence cag PAI Protein 9e-99 96
HP0543 BAD13931.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-97 96
cagF YP_003728721.1 cag pathogenicity island protein F Virulence cag PAI Protein 1e-97 96
cagF AAN34511.1 putative outer membrane protein CagF Virulence cag PAI Protein 4e-99 96
HP0543 BAD14041.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-98 96
cagF AAN34512.1 putative outer membrane protein CagF Virulence cag PAI Protein 8e-98 96
cagF AAC44701.1 CagF Virulence cag PAI Protein 3e-97 95
cagF AAN34513.1 putative outer membrane protein CagF Virulence cag PAI Protein 7e-98 95
cagF AAN34517.1 putative outer membrane protein CagF Virulence cag PAI Protein 3e-97 95
cagF AAN34514.1 putative outer membrane protein CagF Virulence cag PAI Protein 3e-97 95
cag22 AAR03877.1 Cag22 Virulence cag PAI Protein 3e-97 95
HP0543 BAD13986.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-97 95
cagF AAN34518.1 putative outer membrane protein CagF Virulence cag PAI Protein 1e-97 95
cagF AAN34516.1 putative outer membrane protein CagF Virulence cag PAI Protein 1e-96 95
cagF AAN34509.1 putative outer membrane protein CagF Virulence cag PAI Protein 9e-97 95
cag22 AAR03935.1 Cag22 Virulence cag PAI Protein 7e-97 95
HP0543 NP_207339.1 cag pathogenicity island protein (cag22) Virulence cag PAI Protein 1e-97 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH112_04320 YP_006227558.1 cag pathogenicity island protein CagF VFG0302 Protein 5e-98 95