Gene Information

Name : HPSH112_04305 (HPSH112_04305)
Accession : YP_006227555.1
Strain : Helicobacter pylori Shi112
Genome accession: NC_017741
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 868311 - 868658 bp
Length : 348 bp
Strand : +
Note : -

DNA sequence : 
ATGAAATTTCTTACAAGAATCACTGACAGCTACAAGAAGGTTGTAGTAACTTTAGGGCTAGTGATAACAACCAATCCTTT
AATGGCGGTCAGCAATCCTGCAACAGGCATTAGTGAGACTAAAACTTTGGTTGTTCAGATCATTTCTGTTTTAGCGATCG
TAGGTGGTTGCGCTCTAGGGGTCAAAGGCATAGCGGATATTTGGAAAATCTCTGATGACATCAAAAGAGGTCAGGCGACT
GTTTTTGCTTATGCACAACCCATAGCTATGTTAGCGGTGGCAGGCGGTATTATCTATTTGAGCACTAAGTTTGGCTTCAA
TATTGGCGAAGGTGGAGGAGCTAGCTAA

Protein sequence : 
MKFLTRITDSYKKVVVTLGLVITTNPLMAVSNPATGISETKTLVVQIISVLAIVGGCALGVKGIADIWKISDDIKRGQAT
VFAYAQPIAMLAVAGGIIYLSTKFGFNIGEGGGAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0546 BAD14071.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-46 95
HP0546 BAD13907.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-47 95
HP0546 BAD13798.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-46 94
cagC YP_005777287.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-45 94
HP0546 BAD14017.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-46 94
cagC YP_005774525.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-46 94
cagC YP_005779047.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-46 94
HP0546 BAD13852.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-41 94
HP0546 BAD14044.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-46 94
cag25 AAR03938.1 Cag25 Virulence cag PAI Protein 9e-41 94
cag25 AAR03908.1 Cag25 Virulence cag PAI Protein 7e-41 94
HP0546 BAD13989.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-45 93
HP0546 BAD13934.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-46 93
HP0546 NP_207342.1 cag pathogenicity island protein (cag25) Virulence cag PAI Protein 3e-40 93
HP0546 BAD13962.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-46 93
cagC NP_223212.1 cag island protein Virulence cag PAI Protein 2e-40 93
cagC AGC69805.1 cag pathogenicity island protein C Virulence cag PAI Protein 5e-46 93
cag25 AAR03969.1 Cag25 Virulence cag PAI Protein 6e-41 93
HP0546 BAD13825.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-45 91
HP0546 BAD13879.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-45 91
cag25 AAR03880.1 Cag25 Virulence cag PAI Protein 2e-45 91
cagC AAC44704.1 CagC Virulence cag PAI Protein 9e-40 91
cagC YP_005775746.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-45 91
cagC YP_003728718.1 cag pathogenicity island protein C Virulence cag PAI Protein 2e-35 90

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH112_04305 YP_006227555.1 cag pathogenicity island protein CagC VFG0305 Protein 8e-41 93