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Name : HPSH112_01300 (HPSH112_01300) Accession : YP_006226980.1 Strain : Helicobacter pylori Shi112 Genome accession: NC_017741 Putative virulence/resistance : Virulence Product : type IV secretion system protein VirD4 Function : - COG functional category : - COG ID : - EC number : - Position : 250643 - 252784 bp Length : 2142 bp Strand : + Note : COG3505 Type IV secretory pathway, VirD4 components DNA sequence : ATGAAAATGCAATTTGTGAAAGCTTTTTGCGTGCTTTTTAGCATTTTACTTATCCCCTTATTTTTTATCTTGGCAAATTA TTATGTTTTTGATGCCATAAAGTCGTTTAGACAGGCTTATTTCTTTTCTCAAAGCGTGTTTATAGGGCTTTATAAGGGAG CGAGTATCTTAGATTTAAAATTTGAAGTCTATATCACTATGATAATGTCTTTAATGCCCTTAGTAGCTACGATTTATATG AGTATTCAAAAGACTAAAGAAACTTCGCATGGCTATGCGAGATGGGCTAATGTTAAAGACATAGAGTGCTTTAAAATCTT TAGTAAAGAGGGCTTTTGTAAGGTAGTGCATAGATTAGGGGTGCAATTTGACAAGGGATTTATTCTAGGTAAATTTGGTT TTCCAAAACTTAGAGATGTGTGTTATGACAAGCCCTTAGGAGCCATGATTGTTGCACCACCTGGAGCTGGTAAAACCGCA TGCGTGGCTTTACCCAATTTATTGACTTTGCCTAATAGCTGTATTATCACTGATATTAAAGGCGAACTAAGAGATAAGAC TGCTGGATATAGACAAAAATTCTTAAACAATAGGATTTTAATCTTTAATCCCTATGGTGATGATAATACTTGTTATTTTA ATCCTTTTGATAAAAGGATTGTAAAACCCATGAACTTTGACCAACGCCTAAGACTTGTGCAAGAGAATGCTAATAATGTC TTTATTAGCGAAGAAAAGGGCGAAGACCATTGGGTATCTAAAGCGAAAGATTTGTTTAGCTTTTATGCTTTGCATGATGT TTGTTCCAAAGATGAAACAAACTTTTTTGATGTGGCTATGGGTCCAAATAGAGACTATGTCAATTTAATTGATAAAAGAA GTCGCTATTACAAACAGCTCTATCAGCACGACAAAAAGACAGGCGAAATTATCCTAGACCCACAAACTAATGAGCCTATT TTAATTCCTAATGTGAATGCGAGAAAATTGTGGTATTTGCAAGTTTCAGAGCAAAAATACGCTGACCCCAAAGACCCTAG AAATTTTGACCCAAATGAGCCTGAACCAGCCCCTAGAAGTGAAGGGGCGTTAGATGAAATTGTAAGAAATGATGCAAGAG CGTGGGCTAATAGTGCTGAAGAAGAATTTGCAAGTATTATTTCTACTTTCAATCGCTTTGTGTCTGTTTTTAAAAGCAAT CAAGTAAGAATTGCTACTTCTAAAATGAGCTTTGATTATGAAGAATTAAGAACAGACAATATCAGTCTTTATATTGTGAT TGCTCAAAAAGACATCAACACGCTTGCCCCCTTAGTTAGAGTGATTTTAGAAAGTATTGCTAAAAACTTACTAACTAATG AAAGTTCTAAAAAAGAAGAACGCATTTATATGATTTTAGATGAATTTGTTAGATTTGGTAAGTTGCCTTTCTTGTTAGAA ATGCCTGCACTTTGTCGCTCTTATAATGTCGTTCCCTTATTCATCACGCAAGATTATGCGATGATTAGAAAAAATTATAG CGATGATGATTTGAAAATCTTAAAAGGCGTGGTGCATTATAACATTGTCTTTAAGATGAATAGTGCTGAAGATGCTGAGA TTGTTTCTAAGGAAGTGGGCGAATTCACTAGACAATCTAAAAATTATTCTACTGAAAAGGGTCAGCTAGTCTTTGGAGGC AGTTCTTCTTATAGCCATGAGGGTAGAAATTTACTCACAGCTCAAGACATTATGAATATAAAATCAGATGAAGTTATTGT CATTGTTACAGGAGCTAAAGCGACCCCTTTAAAACTTAAAGCTAATTATTGGTTTAGAGATAAAGAGCTTTTAAAAAGAG CTAACTTGCCTATTGATTTAGAAGTAGAAAGAAAAAGATTTAAAGAGTCTGTGCAACCCACTACTTCACAAAAAGAGAGT GAAAATTCAAATCTAACAGAAAGCGAGAAAGATAATGAAAACCCCACTACTTCACAAGAAAAAAACAAGAATGAAAACAC AGAGCAAGAAAATCACAATGAAATTGATGAGATTTTAAAAAAGCCACTGAGTGAAATCAGCATGGAAGAAAAAAGAGCCT TATTTAAGAAAATGCAACAAGGCGATGAACAAAGCGAGCAAGAGAAAGACACCCAAAGTTAA Protein sequence : MKMQFVKAFCVLFSILLIPLFFILANYYVFDAIKSFRQAYFFSQSVFIGLYKGASILDLKFEVYITMIMSLMPLVATIYM SIQKTKETSHGYARWANVKDIECFKIFSKEGFCKVVHRLGVQFDKGFILGKFGFPKLRDVCYDKPLGAMIVAPPGAGKTA CVALPNLLTLPNSCIITDIKGELRDKTAGYRQKFLNNRILIFNPYGDDNTCYFNPFDKRIVKPMNFDQRLRLVQENANNV FISEEKGEDHWVSKAKDLFSFYALHDVCSKDETNFFDVAMGPNRDYVNLIDKRSRYYKQLYQHDKKTGEIILDPQTNEPI LIPNVNARKLWYLQVSEQKYADPKDPRNFDPNEPEPAPRSEGALDEIVRNDARAWANSAEEEFASIISTFNRFVSVFKSN QVRIATSKMSFDYEELRTDNISLYIVIAQKDINTLAPLVRVILESIAKNLLTNESSKKEERIYMILDEFVRFGKLPFLLE MPALCRSYNVVPLFITQDYAMIRKNYSDDDLKILKGVVHYNIVFKMNSAEDAEIVSKEVGEFTRQSKNYSTEKGQLVFGG SSSYSHEGRNLLTAQDIMNIKSDEVIVIVTGAKATPLKLKANYWFRDKELLKRANLPIDLEVERKRFKESVQPTTSQKES ENSNLTESEKDNENPTTSQEKNKNENTEQENHNEIDEILKKPLSEISMEEKRALFKKMQQGDEQSEQEKDTQS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virD4-1 | YP_002301090.1 | VirD4 coupling protein | Virulence | cag PAI | Protein | 3e-130 | 53 |
