|
Name : HPSH112_07075 (HPSH112_07075) Accession : YP_006228091.1 Strain : Helicobacter pylori Shi112 Genome accession: NC_017741 Putative virulence/resistance : Virulence Product : conjugal plasmid transfer system protein Function : - COG functional category : - COG ID : - EC number : - Position : 1441086 - 1442627 bp Length : 1542 bp Strand : - Note : COG3504 Type IV secretory pathway, VirB9 components DNA sequence : ATGAAAAAACTCACTCTATCGCTATTTTTATATTGCGCTTTACTTAGTGCTGAAGAGGATATTTTTAGAAACCATACAAA TGAAACTGATCTTACAAGTTCTTTTGAACATGGCAAAGAAAACAACAATCTTATCCCAGCAAAATCTGATAGTTTAGAAA GTTTCAAAGAACAAGAAAACAAAGAAAAAGCCAAACAGCTTATGGATTTAAAAGCCTTACAGAGCGTGTATTTTTCTAAA AATAGAAAATTGCAAGACAATAATTTTAATGTCTTATATGTGGCAGGCAACACCAACAAAATCCGCTTACGCTATGCGAT GACTACCACTTTTATTTTTGACAATGATCCTATTATCTATGTGAGTTTAGGAGATTCTAGCGGATTTGAACTCACTTACC CCACTAATGATCATTACGACTTGTCCAACATGCTAGTGATCAAACCCTTGCTTATAGGGGTGGATACAAACCTAACCGTA GTCGGAGCGAGCGGAACAATTTATACTTTTTACTTGTTTAGCACCACTTACACTAGCAAATTTCAAAGCTATTTTTCAGT GTTTGTCTCTAATAAAAGGGCTATCGGTAAGCTCAATATTTTGTCTAAAAACGAGCTAGAAAAAAGGGAGCAAGAACAAT GGGCTAAAACAGAAACAAATACAAATAGCTCCAATAAACAAGACAAACAAAAGCTTGACTACAGAAAAATCAATTATGAG AGCAAGGAAATTGATGATGGCAAGTTTATAAGAATTGGAGATGAGGTCAATCACATTTTCATTGAAAAAGCTAAAATCAA TCGTGGTTATTTGCAAAAACCCAAACACAAACGCACCTGGTGGAGTTTGTGGCTCTATAAAAAACCCAGTGATGATGCGC TTGATATAAAGGCACTAGATGTCTTTGATGATGGCAAATACACTTATTTTAGATATGACAGAGATCAAGCCTTTTCAAAA TTTCCTTACACCTATAAGGTTGTAGATGGGTATGATAATCCTATCAATAGCCGTGTGGTAGGGAATTATATTATTGCTGA AGATGTTTCTAAAAAATGGACTTTAAGGAGCGGTAAGGAATATGTGTGCGTAAGAAGAGATAAACACAAATACCAAAAAT CTAAGGACTTCATGCGCTTAAAAAGGCTTTTAGAGCAAGATGAAGCCATGAAAGCCAAACGAAACAACGTTCACTTGATT GAAGACACTACGCCTCAACCTAAAAATGCCATTAGCGTAACGGAGTTGTTAGATCAAATCAAAAACCAAACTCCAAATGA AAAATGCCGATCCTTAAATGAAGAAGAAGTTAAGACTTTAGAAGAGGTTAAAAACATCATAAAAGCTCCCAAGCCTTTGC AAAAAGATTTGAAAAACAAGCTTAAAAAACACACAATCAAAACCCATTATTGCGTGCCTATCCCCTATATAGAAAGACCA AAAACCACTGATGGTTTAGAGAATAATAAAAAGGGGATGAATAACACCCCAAAACAAAATCAAGCAAACCCTATTAAAGA GATTAAAGAAAACAAGAAATGA Protein sequence : MKKLTLSLFLYCALLSAEEDIFRNHTNETDLTSSFEHGKENNNLIPAKSDSLESFKEQENKEKAKQLMDLKALQSVYFSK NRKLQDNNFNVLYVAGNTNKIRLRYAMTTTFIFDNDPIIYVSLGDSSGFELTYPTNDHYDLSNMLVIKPLLIGVDTNLTV VGASGTIYTFYLFSTTYTSKFQSYFSVFVSNKRAIGKLNILSKNELEKREQEQWAKTETNTNSSNKQDKQKLDYRKINYE SKEIDDGKFIRIGDEVNHIFIEKAKINRGYLQKPKHKRTWWSLWLYKKPSDDALDIKALDVFDDGKYTYFRYDRDQAFSK FPYTYKVVDGYDNPINSRVVGNYIIAEDVSKKWTLRSGKEYVCVRRDKHKYQKSKDFMRLKRLLEQDEAMKAKRNNVHLI EDTTPQPKNAISVTELLDQIKNQTPNEKCRSLNEEEVKTLEEVKNIIKAPKPLQKDLKNKLKKHTIKTHYCVPIPYIERP KTTDGLENNKKGMNNTPKQNQANPIKEIKENKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virB9-1 | YP_002301099.1 | VirB9 type IV secretion protein | Virulence | cag PAI | Protein | 0.0 | 98 |
