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Name : HPSH112_07005 (HPSH112_07005) Accession : YP_006228079.1 Strain : Helicobacter pylori Shi112 Genome accession: NC_017741 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : - COG ID : - EC number : - Position : 1431921 - 1433828 bp Length : 1908 bp Strand : - Note : COG3843 Type IV secretory pathway, VirD2 components (relaxase) DNA sequence : ATGGCGTTAGAAAAAAGTTATAAAGACTTTGAAAGCGATGAGCTTTTTGATTATGAGATCATCAAGCCCAAAAAGACGCT TAAGGTACAATACACTTATGCTAAACGCTACTATAAAGAAGTGGAAAAGTTTGCTAAAAATTTAACTCAACTTACACAAG AAGAATTTATGCGTTTAAGAGATCCGCAAAAACAAGTGGTCATCAAAAACATAGGCAATATGACACGCTTGCATTCAAAA AGGGCGATGGATTATATCGCTAAACATGGTGAGCTAGTGAGAGATGAATTTTTTAATGAAGTTAATTATAATGATATAGC AGAGCAATGGAATGAGCAATTTGAAAAATTATTAGAAAATAAGAGCCGTGTTAAAAATTGCGCTTTACATCTAGTGTTTA GCATTGATGAAAATTGTAATGAAAAAAATTTAAAAGCTTTAGAATTAAGCGTGTATCAAACACTCACTAACACGCTAGGT TATGATTATCCTTTTATAATGAAACTCCATACACACCAAAACAATCCGCATGCGCATGTGATTATCAACAAGACTAACAG AATTACCAATAAGCAACTACGCTTTAATTCTAAAGACAGCTGTAAAGAGTTTTACCACACACTAAGAGAAACATTTAAAG ATTATTTATTTGCTAACTCAAAAGGCGAATTGCAATATTCTAACACGCCTAATATTTATAAGGTGATTAAAGACATAGAA ACAGAGTTAGATACGCTAGAAAAACAGGCTAGAAACAATAAGAGTTTTAGGTATGAAAACTATTTCTATAAAGTTTTGGG CAGTGCAACTTCTCAAATAGAAAGCTTGAAAAAAAGAGAAAATGCCCTATCTGATCATTTAGATAGTCTAAAAAGTTTAT TAGAAAAAACACATTGGGAAAAAGAAAAATTCACGCCCCCAATAAATGAAAAAGAACTTAACCAACAACTTAAAGAAATA AAATGGTTAAATAAAGAATCTTTAACCCCCAAAAACACTTATAAAAAAACTCAAAAATTGGTTGTCTGTAAAAGCCCTTT AATAAAAGATTATCTTTATACTACCAAAAAACTTTTTGCCACACAGAAAAAGATTATAGCTTTAGAGAAAGATTATAAAG ATTTAAAAGTCTTGAAGGAAGAATTTAGCAAAGATTTAGAAGCTGATTTATCCCATTCAAAAAAACGCTTTGAGCTTTAC ACTAGACTAAAAAGCATGAGCAAAGTTTTTATAAGCAAAAGCATTGTTAAAAATTTAGAAAAAATTGCTTTAAATTTTAA AAGCGATAGACATAGTATTTCGCAAAGAGCTTTTGAATTTTTTAGGTATATGAATTATCAAAATTTAAGCTTGACTGATA AAGGCAATATGTTTTTAGTGGCTAAGTTTTTTAAAGATAGTGCTTTACTTGTTAATATTGCTAGGTTTGAAATGAAAAAG ATAGATGATAGTGTTAAAAATTCTAACCCACAAGGCAATTTATTAGACAAACAAGCTTGGCTTAATCTTTTAGAACATTT AAAAAGACTTGAAGAGAAAAACTATTGTTTTGCTAAGAAGCGAAAAGAATTCTTAGAAACTAGAGCTATGGAGCTATCAA AAGATTTAAAATTTTTAACACAGGCCAATGAAAATGATTTGCCTATTTATGAAAGAGGGCAAAGGGATAAAATCATTAAA CGCTGTGAAAAATCGCTTAATTTTTTGCAGAAAGAATTACAATGCTTTAAAACCTTATTGAAAAGTGCAAGTATAGCTTT AGAAAACTTGCAAAGCAACCATCAAATCACAGCCGTTACACAAGACACACAAGAAAACACAAACGCACTCAAAAATACCA CTCAAGATTTTAACAAAACTACCAATGAACCCACAAACCCTAACAATAACCATGAAATGGATTTTTAA Protein sequence : MALEKSYKDFESDELFDYEIIKPKKTLKVQYTYAKRYYKEVEKFAKNLTQLTQEEFMRLRDPQKQVVIKNIGNMTRLHSK RAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLENKSRVKNCALHLVFSIDENCNEKNLKALELSVYQTLTNTLG YDYPFIMKLHTHQNNPHAHVIINKTNRITNKQLRFNSKDSCKEFYHTLRETFKDYLFANSKGELQYSNTPNIYKVIKDIE TELDTLEKQARNNKSFRYENYFYKVLGSATSQIESLKKRENALSDHLDSLKSLLEKTHWEKEKFTPPINEKELNQQLKEI KWLNKESLTPKNTYKKTQKLVVCKSPLIKDYLYTTKKLFATQKKIIALEKDYKDLKVLKEEFSKDLEADLSHSKKRFELY TRLKSMSKVFISKSIVKNLEKIALNFKSDRHSISQRAFEFFRYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKK IDDSVKNSNPQGNLLDKQAWLNLLEHLKRLEEKNYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIK RCEKSLNFLQKELQCFKTLLKSASIALENLQSNHQITAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNHEMDF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virD2-1 | YP_002301087.1 | relaxase | Virulence | cag PAI | Protein | 0.0 | 94 |
