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Name : HPSH112_06985 (HPSH112_06985) Accession : YP_006228075.1 Strain : Helicobacter pylori Shi112 Genome accession: NC_017741 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : - COG ID : - EC number : - Position : 1421545 - 1429404 bp Length : 7860 bp Strand : + Note : COG0827 Adenine-specific DNA methylase DNA sequence : ATGCAAAAAAAGAAAGCTAAAAACCCACAACCGAATTTATTTAGCATCTTAGATAATGGCGATATTGCAACAAACAATCT TGCTGAAGAATCAGACAAGGTCAATGAAACACAAGAGCCACTCCCTTATGTCGTAAAAACTCAAATCAATACAGCAAGAA TGATTTCTAGAAATCCTATTGAATGGGCAAGGTATTTAAGCTTTGAAAGACGAGTGCATAAGGATAATAGTAGAGAAGAT GTCAATTTCTTTGCTAATGGTGAGATAAAAGAAAGTTCTCGTGTTTATGAAGCGAATGAGAAAGGGTTTGAAAGGCGTAT AACTAAAAAATACGATCTGATTGATAGAAATAAAGAATTTTTTTCAAAAGAAATTGACATTTTAACCTACAAAAACAGCT TAGAAGAATTGAAAGAGCAAGGTTTAGAAATCCAATTGACCCACCACCATGAAACGCATAAGAAAACCTTAGAAAATGGC AATGAAATCGCTAAAGAATACGACTATCTTAAAGATATTTATCACGAAGTAGAAAGAACAAAAACTGGTGAATTGGTAAG AGGAATAATCCCTAGTATTTCTAGCGCTGAGTATTTTAAGCTCTATAACAAACTGCCTTTTGAATCCATAAACAATGAAA ATACCAAACTGAATACTAATAACACTATTAAAAATACAATAGAGACTAATGCTTCTAACAATATTATTCAAAATAATGAT AATAATAATCCAAATTTAAGCATTGCTGATTTAGAATTAGAGCAACAGAATTTAGGAGAACAAAATGGAAAAGAAAGAAC AAATCGCGCAGATGAGCCGAATAGAACTAGAGCAGGAATTCCGCAAGAAATTCACCGCAGAAGCGAACATGGAGGACAGC AAGAGGGAGTGGAGCGATCGAGTGATGAAGAACTTTTACACCAAGACTCTAGTTTATTTATTGAGCCTAGAGAGCAGGGA GGAACAAGAGGAGTTTATAGATCTAGCGACCAACAGGCAGTTTCAGAAAAATCCCATAGAGAGAGAGATAAACTACATGA ACATGTATCTAGAGGAGATGGAGTATCAGCAAGAGCAGATACAAGAGCAGATAGCAATGGAGCATCAAGTCAAGCAAGCC GAATGGAAAATGGAGCAAGAAGCGAAGAAAAGGGGGATAATCCCAGCGATGAGAGAGGAGTATCACCCACACCGCAATCC CCATCTCATCAACAAAATAGCTCCAGAGATTTGGGGCTTTCTCTCTCTAGAGAACAGCCAGGACAGACTGGACGCTTACG CCTTTTTGATCATGGACAGATGGGCTCATTATTTCCCACAGACCATGAAAACCAAAGATCAAAGAACGATAATGAGCTTG ATAGAAGCAGTAATAGAACAAACGAAAATGGAGACAAAAGCCCTAGACAGAATGGAAGCGCAAATCAAGAGAGCGCAAGG AGTGAGCGATATGGAATTGCTCAAGGAAGCTCAAGTCAATCAGTATTACCACTTGCTCAAAGCCGATTACATCATGCAGG ACTCAGCACACCAAATGGACTTGGAAACCTTGAAGAAGACAGGGATCAAGAGAGAGGACTTTTATCAAATTTAGACCATT TAGAAAGCCTGCTTAACGCTATTAGAAACAACACCATAGCGAGTGAGCCTGACTTTAGAACTAGGCTCTTAGAAGCCATT CAAAACAACGAGCCTTTAAAAGATAGCATTGTAGGGATGCAGCTCCTTAAAGACCCTACGACTAAAATCTTTTATGACAA ATTCCAATTAAAAATCAGCCCTAAAAAAGTATTAGAGATTTTAGAAAATCGCATTAAAAAATCCATTGAAACAGCGAATG AAACGCTAAACGCATTCAACGCGCTGGATAGTCAAGCCATTGATGGAAACGCTATTTCTAATAGTGTAGGATTAAATCCC ACACAAGAGAGTGGGATAACAGACAATAGCGTAGAGTTAAATAACGCTCAAGAACAAACCGCGCAAGAGCAAGACACGCA AGAAAACGCGCAAACCACGATAAAACAAGAAACACCAACCGCACCAGCCATCCCCCTTAATCCTAAAATAGATTTTAAAC CGAGCGAAGAAGTTTTAATTAAGGGAGCTAAAACTCGCTACAAGGCTAACATAAAAGCCATTGAGCTTTTAAAAGAATTG CAAGCCAAACAAGAGATCTTAAAAGGCGATTATTACGCCACTCAAGAAGAGCAAAAAATCCTAGCGCAATTTAGCGGATG GGGTGGGTTAGAAAGCTACTTTAAAAAGGATCAACGCCCTGAAGAATTTAAGGAATTAAACGCCTTACTCACTAAAGATG AATTCAGAAGAGCTTATTCAAGCACAAGAGACGCTTACTACACCCCTAAATTAGTTATTGATAGCATTTATCAGGGATTA GATCAATTAGGGTTTAATAACGACAACCATCAAAAAGAAATCTTTGAACCCAGTTTAGGCACAGGCAAATTCATCGCTCA TGCGCCAAGCGATAAGAATTACCGCTTTATGGGAACAGAATTAGATCCTATTAGCGCTAATATTTCTAAATTCCTTTACC CTAATCAAGTCATCAACAACACCGCTTTAGAAAACCACCAATTCTATCAAGAATACGATGCGTTTGTGGGCAATCCTCCT TATGGCAGTCATAAAATCTATAGCTCCAATGACAAAGAATTGAGTAACGAGAGCGTTCATAATTACTTTTTAGGGAAAGC TATCAAAGAATTGAAAGATGATGGCATAGGAGCGTTTGTGGTGAGTTCTTGGTTTATGGATGGTAAAAACCCTAAAATGA GAGAACACATCGCGCAAAACACCACTTTTTTAGGAGCGATAAGATTGCCTAATAGCGTGTTTAAAGCAACAGGCGCTGAA GTGAGTAGCGACATTGTGTTTTTTAAAAAAGGCGTTGATGGAGCAACCAATCAAAGCTTCACTAAAGCTATGCCTTATTA TGACAAGATCATTGATAGCTTGGATAATGACACCCTTTTTGCCTTGCAAAACAACCGCTTTGATAGTTTTACTCCTAGCG ATCAACTTAAGATTGTCAATGCGATTGCAAGCCATTTTGGTTTCAAACAAGAAAAATTGCAACGCTGGTATGAAAAAATA GACACCGCTAACTTTGGCTACAGAGAACAAGACTATAAGATCATCAAAGGCTTCATTGATAAAGTTGGCGAGAATAATAT CAATCTCAACGAACAAACCTTAAATGAATACTTTATCCACCACCCTGAAAACATTCTAGGGCATTTGAGTTTGGAAAAAA CCCGCTATAGCTTTGAAATAAATGGCGAACAAATTTACAAATACGAGTTGCAAGCTTTAGAGGATAAAAGCTTAGACTTA TCCCAAGCTCTTCATCAAGCGATAGAAAAATTGCCTAAAGATGTCTATCAATACCATAAGACTACCTTTAAAACAGACGC TCTCATTATTGATGCAAATAACGAACGCTATCAAGAAGTTCAAAAGCTTATCAAAAATTTAGAAAGGGGGGAATTAGTCA AGTGGGATAATCTTTATTTCCAACTAGAACAAAATAATGAAAGGGGCATTTTTTTAAAACCCACTAAAATCAACTCTAAA GTCCAAGATTCACGACTAAAAGCCTATTTTAAAATTAAAGACGCTTTGAATGATTTAACGAGTGCAGAATTAAGCCCCTT AAGCTCTGATTTGGAGCTAGAAAGTAAAAGAGTTAGGCTCAATCTTGTTTATGATGAATTTGTCAAGAAATTTGGCTATC TCAATGAGAATAAAAATCGTAAGGATATCAAACAAGATTTGTATGGCGCTAAAGTCTTAGGATTAGAAAAAGACTTTGAA AAAGAAATCACCCCTAGAAGCGCCAAAATGCAAAACATAGAGCCAAGGCAAGCTCAAGCTAAAAAAGCTCAAATCTTTTT TGAAAGGACTTTAAACCCTAAAAAAGAACTTATTATCACTAACGCCAAAGAGGCATTAATTGCAAGCATCAATCAAAAAG GGGGTTTAAATTTGCATTTCATTAGAGATCATTTCGCAACCCAAAGCTTAGAAACCACGATTAAAGAACTTTTAGAGCAA AAACTTATTTATAAAGACCACAAGGATAATGGCGACTATGTTTTAGCGAACGATTATTTGAGCGGCAATGTGAAAAGAAA ACTCAAAGAAGTTAAAGAAGCCATCAATCAAGGCGTGGAGGGATTAGAGGCTAATGTGAAAGATCTAGAGCTGATTATCC CTAAAGATTTGAAAGCCACTGAAATCATGGCTAATATCAACAGCCCTTGGATACCCACTCAGTATTTAGAAGAGTTTTTA ATAGAATTAGCCGCTAACCATTATGAAAAGCAATACGGCGATAAAATGACAGATTACCAACTAGGCAATCTCAAAGAAGG CATCAAAGTAGAACACCTAAGCGGTGCTTATGAAGTTTTGGTTAGAAACAATGAATTAAACGAGCTTTATGGTATTAGGC ATAAAGACAAACCGCATTCTTATAAAGCGCCTTTTGAAAGCCTTTTAATAAAAGTCTTAAACAACAAGGATTTGAGCGTT AAATACGCCCAAGTTGATCCTAATGACCCTAAAAAAGAAATCTTTATCACTGATGAAGAGCAAAGCAATCTCGCTAGACA AAAAGCAGAAGAATTGAAAGAAGCTTTTAAAGACTGGATTTATAAGGATTATACAAGAAGAACCCATTTAGAGCAAATCT ATAATGACACTTTCAACAATTCTGTTTTAAAAACCTATGATGGCTCGCAATTAGAACTAGAGGGCTTTAACCACCATATC AGCTTGCGCCCCCACCAAAAGAACGCTATTTTTAGAACCATCCAAGACAGGGCGGTGTGTTTAGACCATCAGGTTGGAGC AGGCAAGACTTTGTGCGCTATAGCCAGTTGCATGGAACAAAAACGCATGGGGTTAGTGAATAAAACGCTCATTGCCGTGC CTAACCATTTAACCAAGCAATGGGGCGATGAATTTTATAAGGCTTACCCTAACGCTAATGTGTTAGTTGTTGATAGCAAG GACATCACTGAAAAAGAAAGAGAGCTTTTATTCAATCAAATCGCTAACAACAATTATGACGCTGTGATTATCGCGCACAC CCATTTGGAATTATTGTCTAACCCTAGAGGAATCATAGAAGAATTGAAAGAAGAAGAACTAGTGAATGCCGAAAAAAACT TTGAAAGGCAAGAACTGGCTTATAAAAATAACCCTAGAGAAACTAAAAAACCCAATGAAAGAGCCTTTAAAAGCAAGCTG GATAAAATCCGTGCTAAATACGATGCGATTTTAGAAAAACAAGGCTCTCATATTGATATTAGTCAAATGGGGATTGACAA TTTGATTGTGGATGAAGCCCACTTATTCAAAAATCTAGCCTTTGAAACTTCTATGGAAAAAATTGCAGGGCTTGGTAACC AACAAGGCTCTAATCGCGCCAGAGATTTGTTGATTAAAACGCGCTACTTGCATCAAAACAATAAGAAAATCATGTTTTTA ACCGGCACGCCTATAGCTAATTCCTTGAGTGAAATGTATCACTTGCAACGCTACCTGACCCCTGATGTGTTGGAAGAAAG AGGGTTAGAATTCTTTGATGATTGGGCTAAGACTTATGGGGAAGTGGTGAATGATTTTGAATTAGACACTTCCGCTCAAA GTTATAAAATGGTTAATCGCTTTTCTAAATTTAGCGATGTGCAAGGCTTAAGCACCATGTATAGAGCTTTTGCGGATATT GTCTCCAATGATGATATTTTAAAGCATAACCCCCACTTTGTGCCTAAAGTGTATGGGGATAAACCTATCAATGTGGTGGT GAAAAGAAGCCAAGAAGTGGCTCAATTTATTGGCGTGGCTGATGAAAATGGCAAATATAATGAAGGCTCTATCATTGATA GGATGCAAAAATGCGAGGGCAAGAAAAGCAAAAAAGGGCAAGACAATATCCTTTCTTGCACCACAGACGCTAGAAAAGTG GCTCTGGATTACCGCTTGATTGACCCTAACGCTAAAGTAGAAAAAGAATTTTCTAAAAGCTATGCTATGGCAAAAAATAT CTATGAGAATTATTTAGAAACTAATGCCACTAAAGGCACACAACTTGGTTTCATAGGTCTATCCACACCCAAAACCCATA GCCAAAAAGTGAGTTTAGAAGCGCTAGATAACGCTCATGAGATAGAAAATAAAAATCCCCTAGATGAAGCTCAAGAACTT TTAGAGAGCTTGTCTAGTTATGATGAAAATGGCAATCTTATCGCTCCTAGCAAGAAAGAATTAGAGAACGAGCTCAAAGA GAAAGAGGCTAAAAGCGTCAATTTAGATGAAGAGCTAGCTAAAGGCTGTAAGTTTGATGTTTATAGCGATGTTTTAAGGC ATTTAGTCCAAATGGGTATCCCACAAAATGAAATCGCTTTCATCCATGACGCTAAAACCGAAGAGCAAAAACAGGATTTG TTTAAAAAGATTAATCGTGGCGGAGTCAGGGTATTATTGGGCAGTCCCGCTAAAATGGGCGTAGGCACTAATGTGCAAGA AAGATTAGTCGCTATGCATGAATTAGATTGCCCATGGAGACCTGATGAATTGTTGCAAATGGAAGGGCGTGGGATAAGAC AAGGCAATATTTTGCACCAAAACGATCCTGAAAATTTTAGAATGAAAATCTATCGCTACGCCACTGAAAAAACTTATGAT AGCCGTATGTGGCAAATCATAGAGACTAAATCTAAAGGCATAGAGCAATTTAGAAACGCGCACAAATTAGGCTTGAATGA ATTAGAAGACTTTAACATGGGGAGTTCTAATGCGAGTGAGATGAAAGCAGAAGCAACAGGTAATCCCTTAATTATTGAAG AAGTCAAATTGAGAGCTGAAATCAAAAACGAAGAAGCAAAATACAAAGCTTTCAATAAAGAAAATTACTTCAATGAAGAG AATTTGAAAAACAACTCCTCTAAATTGGATTATCTTAAACAGGAATTGAAAGATTTAGAAACGCTTCAAAGCTCTGTAAT GATCCCCACTCATACAGAGATCAAGCTCTATGATTTGAAAAATGAAGAGAGTAAGGATTATGAGCTTATCAAAGTTAAAG AAGTAGAGCCTTTAAAAGAAAACGCCTCTATGAGTGAAGAATTAACGCACAAAAAACTCAAAGAACAAAACAAGCAAATA GCCGAACAAAATAAAGAAAAGCTAGATGCTATTAAAAAGCAATTTGCAAGCAATTTGAACGACTTGTTTTTCAATGAGGA AAGAGATTGTAAGCTTTTAGAATACAAGGGCTTTGTGGTGAATGCTTATAAAACTAAGTATCAAGTGGAGTTTAGTTTAA ACCCTAAAGACAATCCAAATATTGCCTATAGCCCTAGCAATATGGTTTATAAAAACGATACTGCCAACATGTTTAGCTCT TATAATTTCTGCGGCGAGATTAAATTTGATGGGTTTTTAAAAAGATTGGATAACGCTATCACTAAACTCCCTGAAAAAAT CAAGGAATTAGAAAACTCCATTAAAATCACTCAAGAAAATATCGCTAAATACACAAGATTAGTGGAACAAAAACCTCCTT ACCCACGACTAGAATACTTGCAAGCTTTAAAATGGGATCATAAAACTCTAATAGATGATTTAGCTAAAATGAGCAAAGAC AGAGATTATAAGCCTGTGTTCAACCCTAAATCTCAAGAAGTCTTAGAGAAAATGAACGCTGAAAAAAGAGCGAGTTTAGA GAATGAGGGTGTAACAGAAGAGATAAAAGAACAAGCCAAAGAAGAAGTGCATAGACCAATGAAAAAAGCATCTAGTGGTG ATTACGACATGGGGATGTGA Protein sequence : MQKKKAKNPQPNLFSILDNGDIATNNLAEESDKVNETQEPLPYVVKTQINTARMISRNPIEWARYLSFERRVHKDNSRED VNFFANGEIKESSRVYEANEKGFERRITKKYDLIDRNKEFFSKEIDILTYKNSLEELKEQGLEIQLTHHHETHKKTLENG NEIAKEYDYLKDIYHEVERTKTGELVRGIIPSISSAEYFKLYNKLPFESINNENTKLNTNNTIKNTIETNASNNIIQNND NNNPNLSIADLELEQQNLGEQNGKERTNRADEPNRTRAGIPQEIHRRSEHGGQQEGVERSSDEELLHQDSSLFIEPREQG GTRGVYRSSDQQAVSEKSHRERDKLHEHVSRGDGVSARADTRADSNGASSQASRMENGARSEEKGDNPSDERGVSPTPQS PSHQQNSSRDLGLSLSREQPGQTGRLRLFDHGQMGSLFPTDHENQRSKNDNELDRSSNRTNENGDKSPRQNGSANQESAR SERYGIAQGSSSQSVLPLAQSRLHHAGLSTPNGLGNLEEDRDQERGLLSNLDHLESLLNAIRNNTIASEPDFRTRLLEAI QNNEPLKDSIVGMQLLKDPTTKIFYDKFQLKISPKKVLEILENRIKKSIETANETLNAFNALDSQAIDGNAISNSVGLNP TQESGITDNSVELNNAQEQTAQEQDTQENAQTTIKQETPTAPAIPLNPKIDFKPSEEVLIKGAKTRYKANIKAIELLKEL QAKQEILKGDYYATQEEQKILAQFSGWGGLESYFKKDQRPEEFKELNALLTKDEFRRAYSSTRDAYYTPKLVIDSIYQGL DQLGFNNDNHQKEIFEPSLGTGKFIAHAPSDKNYRFMGTELDPISANISKFLYPNQVINNTALENHQFYQEYDAFVGNPP YGSHKIYSSNDKELSNESVHNYFLGKAIKELKDDGIGAFVVSSWFMDGKNPKMREHIAQNTTFLGAIRLPNSVFKATGAE VSSDIVFFKKGVDGATNQSFTKAMPYYDKIIDSLDNDTLFALQNNRFDSFTPSDQLKIVNAIASHFGFKQEKLQRWYEKI DTANFGYREQDYKIIKGFIDKVGENNINLNEQTLNEYFIHHPENILGHLSLEKTRYSFEINGEQIYKYELQALEDKSLDL SQALHQAIEKLPKDVYQYHKTTFKTDALIIDANNERYQEVQKLIKNLERGELVKWDNLYFQLEQNNERGIFLKPTKINSK VQDSRLKAYFKIKDALNDLTSAELSPLSSDLELESKRVRLNLVYDEFVKKFGYLNENKNRKDIKQDLYGAKVLGLEKDFE KEITPRSAKMQNIEPRQAQAKKAQIFFERTLNPKKELIITNAKEALIASINQKGGLNLHFIRDHFATQSLETTIKELLEQ KLIYKDHKDNGDYVLANDYLSGNVKRKLKEVKEAINQGVEGLEANVKDLELIIPKDLKATEIMANINSPWIPTQYLEEFL IELAANHYEKQYGDKMTDYQLGNLKEGIKVEHLSGAYEVLVRNNELNELYGIRHKDKPHSYKAPFESLLIKVLNNKDLSV KYAQVDPNDPKKEIFITDEEQSNLARQKAEELKEAFKDWIYKDYTRRTHLEQIYNDTFNNSVLKTYDGSQLELEGFNHHI SLRPHQKNAIFRTIQDRAVCLDHQVGAGKTLCAIASCMEQKRMGLVNKTLIAVPNHLTKQWGDEFYKAYPNANVLVVDSK DITEKERELLFNQIANNNYDAVIIAHTHLELLSNPRGIIEELKEEELVNAEKNFERQELAYKNNPRETKKPNERAFKSKL DKIRAKYDAILEKQGSHIDISQMGIDNLIVDEAHLFKNLAFETSMEKIAGLGNQQGSNRARDLLIKTRYLHQNNKKIMFL TGTPIANSLSEMYHLQRYLTPDVLEERGLEFFDDWAKTYGEVVNDFELDTSAQSYKMVNRFSKFSDVQGLSTMYRAFADI VSNDDILKHNPHFVPKVYGDKPINVVVKRSQEVAQFIGVADENGKYNEGSIIDRMQKCEGKKSKKGQDNILSCTTDARKV ALDYRLIDPNAKVEKEFSKSYAMAKNIYENYLETNATKGTQLGFIGLSTPKTHSQKVSLEALDNAHEIENKNPLDEAQEL LESLSSYDENGNLIAPSKKELENELKEKEAKSVNLDEELAKGCKFDVYSDVLRHLVQMGIPQNEIAFIHDAKTEEQKQDL FKKINRGGVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQMEGRGIRQGNILHQNDPENFRMKIYRYATEKTYD SRMWQIIETKSKGIEQFRNAHKLGLNELEDFNMGSSNASEMKAEATGNPLIIEEVKLRAEIKNEEAKYKAFNKENYFNEE NLKNNSSKLDYLKQELKDLETLQSSVMIPTHTEIKLYDLKNEESKDYELIKVKEVEPLKENASMSEELTHKKLKEQNKQI AEQNKEKLDAIKKQFASNLNDLFFNEERDCKLLEYKGFVVNAYKTKYQVEFSLNPKDNPNIAYSPSNMVYKNDTANMFSS YNFCGEIKFDGFLKRLDNAITKLPEKIKELENSIKITQENIAKYTRLVEQKPPYPRLEYLQALKWDHKTLIDDLAKMSKD RDYKPVFNPKSQEVLEKMNAEKRASLENEGVTEEIKEQAKEEVHRPMKKASSGDYDMGM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HPP12_0447 | YP_002301083.1 | DNA methylase | Not tested | cag PAI | Protein | 0.0 | 93 |
