Name : HPSH169_04745 (HPSH169_04745) Accession : YP_006226126.1 Strain : Helicobacter pylori Shi169 Genome accession: NC_017740 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein CagA Function : - COG functional category : - COG ID : - EC number : - Position : 979647 - 982919 bp Length : 3273 bp Strand : - Note : COG0419 ATPase involved in DNA repair DNA sequence : ATGGCTAACGAAACCATCGATCAAACAAAAAATCCAGATCAAACACCAAGCCAAACGGCTTTTGATTCACAACAATTTAT CAATAATCTTCAAGTGGTTTTCACTAAAGTTGATAGCGCTGTCGCTTCATTTGATCCCGATCAAAAACCAATCGTTGATA AGAACGATAAGGATAACAGGCAAGCTTTTAATGGAATCTCGCAATTAAGGGAAGAATACGCCAATAAAGCGATCAAAAAT CCTACCAAAAAGAATCAGTATTTTTCAGACTTTATCAGTAAGAGCAATGATTTGATCAACAAAGACAATCTCATTGATAC AGATTCTTCCACAAAGAGCTTTCAGAAATTTGGGACTGAGCGTTACCAAATTTTTATGAATTGGGTGTCCCATCAAAAAG ATCCGTCTAAAATCAACACCCAAAAAATCCGAAATTTTATGGAAAATATCGTACAACCCCCTATCTCTGATGATAAAGAA AAAGCGGAGTTTTTGAGGTCTGCCAAACAATCTTTTGCAGGAATTATCATAGGAAACCAAATCCGATCGGATGAAAAATT CATGGGCGTGTTTGAAGAATCTTTGGATGAATCTTTGGATGAATCTTTGGATGAATCTTTGGATGAATCTTTGGATGAAT CTTTGGATGAATCTTTGGATGAATCTTTGAAAGAGAAGCAAGAAGCACAAAACAATGGAGATCCTGGTGGGGATTGGCTT GATATTTTTTTATCGTTTGCATTTGACAAAAAACAATCTTCCGATCTCAAAGAAACGCTCAATCAAGAGTCAAGGCCTAA TGTTGAACAAAATATAGCCACTACCCCCACCCCCATACAAGGCTTACCGCTTGAAGCTAGGGATTTGCTTGATGAAAGGG GTGATTTTTCTAAATTCACTCTTGGTGATCCTAATTACAAGTTCAACCAGTTAGTGGTTCACAATAACGCTCTGTCTTCT ATGCTAATGGGGAGTCATGGCAACATAAAACCTGAAAAAGTTTCATTGTTGTATGGGGATAATGGTGGCCCTGAAGCTAG GCATGATTGGAACGCCACCGTTGGTTATAAAAACCAACAAGGCAACAATGTGGCCACACTCATCAATGCACATCTTAAAA ACGGCAGTGGGTTAATCATAGCGGGTAATGAAAATGGGATTAACAACCCTAGCTTCTATCTCTACAAAAAAGACCAACTC ACAGGCTTGGAGCAAGCGTTGAGTCAAGAAGAGATCCAAAACAAACTAGGTTTCATGGAACTTCTTGCACAAAACAACGC TAAATTAGATAACTTGAGCAAGGAAGAGAAAGAAAAGTTCCAAACTGAGATTGGAAATTTCCAAAAAGACCCTAAGGCTT ATTTAGACTCCCTAGGGAATGATCGCATTGCTTTTGTTTCTAAAAAAGACAACAAGCATTTAGCTTTGGTTACTGAGTTT GGCAATGGGGAATTGAGCTATACCCTCAAAGATTATGGGAAAAGACAAGATAGAGCTTTAGATAGGGAGATAAAAACCAC TCTTCAAGGTAACCTAAAAGATGATGGCGTGATGTTTGTCAATTATTCCAATTTCAAATACACCAACGCCTCCAAGAGTC CTAATGAGGGTATAGGCGCTACGAATGGCGTTTCCCATTTGGAAGCAAATTTTAGCAAGGTAGCTGTCTTTAATTTGCCT AAATTAAATGGTCTCGCTGTCTCTAGTTTTGCAAGGCGGAATTTAGAGAATAAACTGATCGCTAAAGGATTTCCCCCAAA AGAAGCTAGTAAGATCATCAAAGACTTTTTGAACAGCAACAAGGAATTGCTTGGAAAAGCTTTAAACTTCAATAAAGCTG TAGCTGAAGCTAAAAATACAGGCAATTATGGCGGAGTGAAAAAAGCTCAAAAAGATCTTGAAAAATCTATAAGGAAACGA GAGCGTTTAGAGAAAGAAATAACGAAACAATTTGAGAGCAAGAGCGGCAACAAAAATAAAATGGAAGCAAAAGCTCAAGC TAACAGCCAAAAAGATGAGATTTTTAAGCTTATCAATGAAGGGGCTTATAAGGAAGCAAGAATCATCGCTTACGATCAGA ATCTTAAAGGCATCAGGAGGGAATTGAGGGAATTGTTTGATAAAATTGAAAATCTCAACAAGAATTTGAAAGACTTTGGT GAATCTTTTGATGCGCTCAAAAGTGGCAAAAATAAGGATTTCAGCAAGGCAGAAGAAACGCTAAAAGCCCTTGAAAGCTC GGTGAAAGATTTGGGTATCAATCCAGAATGGATTTCAAAAGTTGAAAACCTTAATGCAGCTTTGAATGAATTCAAAAATG GCAAAAATAAGGATTTCAGCAAGGTAACACAAGCAAAAAGCGACCTTGAAAATTCCATTAAGGATGTGATCATCAATCAA GAGATAACGGATAAAGTTGACAATCTCAATCAGGCTGTATCAATAGCTAAAGCGACAGGCGATTTCAGTGGGTTAGATCA AGCGCTAGCCGAACTCAAAAACTTCAATGTTGGAAAAAATTCTGATAGGTCTGAACCCATTTACGCTACGATTGATGATC TCGACGGATCTTCCCCTTTGAAAAGGTATGCTAAAGTTGATGATCTCAGTAAGGTAGGGCAATCAGATAGCCCTGAACCC ATTTACGCTAATCTCGGCGGATCTTCCCCTTTGAAAAGGTATGCTAAAGTTGATGATCTCAGTAAGGTAGGGCTTTCAAG GGAGCAAGAATTGACTCAGAAAATTGGCAATCTCAATCAGGCAGTGTCAGAAGCTAAAGCAGGTTCTTTTGGCAACCTAG AACAAACGATGCATGGACTCAAAGATTCTACAAAAAAGAATGTTGTGAATCTATGGTTTGAAGGTGCAAGAAAAGTGCCT ATTAGTTTGCCTAGTTCGCAAGCGAAATTGGACAATTACGCTACTAACAGCCACACACGCATTAATAGCAATGTCAAAAA TGGAACAATCAATGAAAAAGCGATCGGCATGCTAACGCAAAAAAACCCTGAGTGGCTCAAGCTAGTGAATGATAAGATAG TTGCGCATAATGTGGGAAGCACTCCTTTGTCAGATTATGATAAAATTGGATTCAACCAAAAGGATATGAAAGGTTATTCT GATTCGTTCAAGTTTTCCACCAAGTTGAGCAATGCCGTAAAAAACATTAAGCCTGGCTTTGTGCAATGTTTAACCGATTG CATTTCTGCAGGATCTTACAGCCCAAAGAAAGCGGAACATGGAGTTACAAAAAGTGGTTTCCAGAAATCTTAA Protein sequence : MANETIDQTKNPDQTPSQTAFDSQQFINNLQVVFTKVDSAVASFDPDQKPIVDKNDKDNRQAFNGISQLREEYANKAIKN PTKKNQYFSDFISKSNDLINKDNLIDTDSSTKSFQKFGTERYQIFMNWVSHQKDPSKINTQKIRNFMENIVQPPISDDKE KAEFLRSAKQSFAGIIIGNQIRSDEKFMGVFEESLDESLDESLDESLDESLDESLDESLDESLKEKQEAQNNGDPGGDWL DIFLSFAFDKKQSSDLKETLNQESRPNVEQNIATTPTPIQGLPLEARDLLDERGDFSKFTLGDPNYKFNQLVVHNNALSS MLMGSHGNIKPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKNGSGLIIAGNENGINNPSFYLYKKDQL TGLEQALSQEEIQNKLGFMELLAQNNAKLDNLSKEEKEKFQTEIGNFQKDPKAYLDSLGNDRIAFVSKKDNKHLALVTEF GNGELSYTLKDYGKRQDRALDREIKTTLQGNLKDDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKVAVFNLP KLNGLAVSSFARRNLENKLIAKGFPPKEASKIIKDFLNSNKELLGKALNFNKAVAEAKNTGNYGGVKKAQKDLEKSIRKR ERLEKEITKQFESKSGNKNKMEAKAQANSQKDEIFKLINEGAYKEARIIAYDQNLKGIRRELRELFDKIENLNKNLKDFG ESFDALKSGKNKDFSKAEETLKALESSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQ EITDKVDNLNQAVSIAKATGDFSGLDQALAELKNFNVGKNSDRSEPIYATIDDLDGSSPLKRYAKVDDLSKVGQSDSPEP IYANLGGSSPLKRYAKVDDLSKVGLSREQELTQKIGNLNQAVSEAKAGSFGNLEQTMHGLKDSTKKNVVNLWFEGARKVP ISLPSSQAKLDNYATNSHTRINSNVKNGTINEKAIGMLTQKNPEWLKLVNDKIVAHNVGSTPLSDYDKIGFNQKDMKGYS DSFKFSTKLSNAVKNIKPGFVQCLTDCISAGSYSPKKAEHGVTKSGFQKS |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
cagA | BAD51750.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 78 |
cagA | BAC10429.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 76 |
HP0547 | BAD13935.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 76 |
cagA | BAD51747.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 75 |
cagA | NP_223213.1 | cag island protein, cytotoxicity associated immunodominant antigen | Virulence | cag PAI | Protein | 0.0 | 70 |
cagA | BAD51759.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 69 |
cagA | BAD51752.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 69 |
cagA | BAD51758.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 69 |
cagA | AAF17598.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 69 |
cagA | AAR03939.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 69 |
cagA | BAD51760.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 68 |
cagA | BAD51751.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 68 |
cagA | BAD51766.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 68 |
cagA | BAD51761.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 68 |
cagA | AAC44706.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 66 |
cagA | YP_005777288.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | BAD51755.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 65 |
HP0547 | BAD13963.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 65 |
HP0547 | BAD13880.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | BAC10420.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | AAF17597.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | BAC10435.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | BAD51754.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 65 |
HP0547 | BAD14072.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | YP_005775747.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | BAC10431.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | BAD51753.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | BAD51756.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | YP_005779046.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | BAD51762.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | BAC10419.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | BAD51749.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | YP_005774524.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | BAC10433.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 65 |
HP0547 | BAD14018.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 65 |
cagA | BAC10426.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 64 |
cagA | AGC69806.1 | cag pathogenicity island protein A | Virulence | cag PAI | Protein | 0.0 | 64 |
cagA | BAD51744.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 64 |
cagA | BAD51764.1 | cytotoxin associated protein A | Virulence | cag PAI | Protein | 0.0 | 64 |
cagA | BAC10421.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 64 |
HP0547 | BAD13799.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 64 |
cagA | AAR03909.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 64 |
HP0547 | NP_207343.1 | cag pathogenicity island protein (cag26) | Virulence | cag PAI | Protein | 0.0 | 64 |
cagA | AAR03881.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 64 |
cagA | YP_003728762.1 | cytotoxin-associated protein A | Virulence | cag PAI | Protein | 0.0 | 63 |
cagA | AAR03970.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 63 |
HP0547 | BAD14045.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 62 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
HPSH169_04745 | YP_006226126.1 | cag pathogenicity island protein CagA | VFG0306 | Protein | 0.0 | 64 |