Gene Information

Name : HPSH169_02800 (HPSH169_02800)
Accession : YP_006225752.1
Strain : Helicobacter pylori Shi169
Genome accession: NC_017740
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 568288 - 568911 bp
Length : 624 bp
Strand : -
Note : -

DNA sequence : 
TTGATCAACAATAATAGTAATAAAAAACTAAGAGACTTTTTTTTGAAAGTTCTCTTAAGTTTCGTTGTTTTCAGTTCGTA
TGGGTCAGCAAATAATGATAATCAAGCGAAAAAAGAAGCGCTAGAAAAAGAAAAAAACACTCCTAGTGGGCGTGTTTATA
CGAATTTAGATTTTGATAGTTTCAAGGCGACTATCAAAAATTTGAAAGACAAGAAAGTAACTTTCAAAGAAGTCAATCCC
GATATTATCAAAGATGAAGTTTTTGACTTCGTGATTGTCAATAGAGTCCTTAAAAAAATAAAGGATTTGAAGCATTACGA
TCCAATTATTGAAAAAATCTTTGATGAAAAAGGTAAAGAGATGGGATTGAATGTAGAATTACAGATCAATCCTGAAGTGA
AAGACTTTTTTACTTTCAAAAGCATCAGCACGACCAACAAACAACGCTGCTTTCTGTCATTGCGCGGAGAAACAAGAGAA
ATTCTATGCGATGATAAGCTATATAATGTTTTGTTGGCCGTATTCAATTCTTATGACCCTAATGATCTTTTGAAACATAT
TAGCACTATAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTATATCTATAA

Protein sequence : 
MINNNSNKKLRDFFLKVLLSFVVFSSYGSANNDNQAKKEALEKEKNTPSGRVYTNLDFDSFKATIKNLKDKKVTFKEVNP
DIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETRE
ILCDDKLYNVLLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-80 98
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-80 98
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 4e-79 98
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-79 97
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-79 97
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-79 97
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-79 97
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 6e-80 97
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-79 97
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-80 97
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-79 97
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-79 97
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 3e-78 97
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 1e-76 97
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-79 96
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 2e-79 96
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-77 96
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 1e-78 96
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-79 96
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-79 96
cagD AAF80210.1 CagD Virulence cag PAI Protein 9e-76 96
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-78 95
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 2e-78 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH169_02800 YP_006225752.1 cag pathogenicity island protein CagD VFG0304 Protein 6e-79 95