Gene Information

Name : HPSH169_02780 (HPSH169_02780)
Accession : YP_006225748.1
Strain : Helicobacter pylori Shi169
Genome accession: NC_017740
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 562920 - 564032 bp
Length : 1113 bp
Strand : -
Note : COG0249 Mismatch repair ATPase (MutS family)

DNA sequence : 
ATGGCAGGCACACAAGCTATATATGAATCATCTTCTGCAGGCTTCTTATCGCAAATCTCATCAATCATCTCAAGCACAAG
TGGTGTTGCAGGGCCATTTGCAGGAATAGTGGCGGCTGCTATGACAGCAGCGATTATTCCTACTGTTGTGGCATTTACTA
ATCCGCAAATGACCGCTATCATGACACAATACAATCAGAGCATCGCTGAAGCCGTAAGCATGCCTATGAAAGCCGCTAAC
CAACAATACAACCAATTGTATCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAATAATATCTTAAATATTAGCAAATT
AACAGGGGAATTTAACGCGCAAGGCAACACGCAAGGCGCGCAAATTGGTGCTGTTAATAGTCAGATTGCAAGCATTTTAG
CGAGTAACACTACCCCTAAAAATCCTAGTGCTATTGAAGCTTATGCGACGAATCAAATCGCTGTTCCTAGTGTGCCAACA
ACGGTTGAAATGATGAGCGGTATCTTAGGCAATATTACAAGTGCAGCACCGAAATACGCCCTAGCCCTACAAGAGCAACT
GCGTTCTCAAGCAAGCAACAGCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGTGCACTTGCTA
GCTCATCAAAAGTGTTTTTTAGTTGCATGCAAATTTCTATGACTCCTATGAGTGTCTCTATGCCCACTGTTTATGCCAAA
TACCAGGCGTTAGCCACTAATGCCCTAACTTCAGGCGTTAATCCTATGACCACTCCTGCATGCCCTACTGGGGACAAAGT
TCTTGTCGTTTATTGCTATGCTGAAAAAGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCA
ATTTGTTGCAAAACGCTTCTCAAATGATACTTAATCAATCAGGGTTAGCTACTAGCACCTATGACACTCAAGCGATTTCT
AACATAAGCTCGCTATATAACTACAATATAGTAGCGAATAAATCTTTTTTGAAATCGCATCTGACTTATCTTGATTACAT
CAAAGACAAACTTAAGGGGCAAAAAGATAGCTACCTAACAGAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MAGTQAIYESSSAGFLSQISSIISSTSGVAGPFAGIVAAAMTAAIIPTVVAFTNPQMTAIMTQYNQSIAEAVSMPMKAAN
QQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQIGAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPT
TVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALASSSKVFFSCMQISMTPMSVSMPTVYAK
YQALATNALTSGVNPMTTPACPTGDKVLVVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAIS
NISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-149 98
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 8e-149 98
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 1e-148 98
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-150 98
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 8e-149 98
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-150 98
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-149 98
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 2e-149 98
cagH AAC44699.1 CagH Virulence cag PAI Protein 6e-151 98
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-149 98
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 7e-149 98
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 2e-148 98
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-149 98
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 2e-148 98
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 2e-149 98
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-148 98
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 1e-148 98
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 7e-149 97
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 6e-148 97
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-149 97
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 5e-148 97
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-147 96
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-147 96
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-148 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH169_02780 YP_006225748.1 cag island protein VFG0300 Protein 3e-148 97