|
Name : HPSH169_02700 (HPSH169_02700) Accession : YP_006225732.1 Strain : Helicobacter pylori Shi169 Genome accession: NC_017740 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein (cag7) Function : - COG functional category : - COG ID : - EC number : - Position : 543831 - 549374 bp Length : 5544 bp Strand : - Note : COG2948 Type IV secretory pathway, VirB10 components DNA sequence : ATGAATGAAGAAAACGATAAACTTGAAACTTCTAAAAAAACCCAACAACATTCACCCCAAGATTTATCCAATGAAGAAAC AACAAAAGCCAATCGCTTTGAAGATTCTTCAAAAGAATCCAAAGAAAGCTCAGATCATCATCTTGACAACTCCACAGAAA CTAAAACCAATTTTGATGAAGAAAAGTCAGAAGAAACCCAAACTCAAATGGATTCTGGAGGTAATGAAACTTCAGAATCT AGCAATCTAGCAGACAAGTTATTCAAAAAAGCCAGAAAATTAGTTGATAATAAAAGACCTTTCACTCAGCAAAAGAATTT AGATGAAGAAATCCAAGAACCGAACGAAGAAGACGATCAAGAAAATAATGGGTATCAAGAAGAAACTCAAATGGACTTAA TTGATGATGAAACTTCTAAAAAAACCCAACAACATTCACCCCAAGATTTATCCAATGAAGAAACAATAAAAGCCAATCAC TTTGAAGATTCTTCAAAAGAATCCAACGAAAGCTCAGATCATCATCTTGACAACTCCACAGAAACTAAAACCAATTTTGA TGAATACAAGTCAGAAGAAACCCAAACTCAAATGGATTCTGGAGGTAATGAAACTTCAGAATCTAGCAATCTAGCAGACA AGTTATTCAAAAAAGCCAGAAAATTAGTTGATAATAAAAGACCTTTCACTCAGCAAAAGAATTTAGATGAAGAAATCCAA GAACCGAACGAAGAAGACGATCAAGAAAATAATGGGTATCAAGAAGAAACTCAAATGGACTTAATTGATGATGAAACTTC TAAAAAAACCCAACAACATTCACCCCAAGATTTATCCAATGAAGAAACAATAAAAGCCAATCACTTTGAAGATTCTTCAA AAGAATCCAAAAAAAGCTCAGATCATCATCTTGACAACTACACAGAAACTAAAGCCAATTTTGATGAATACAAGTCAGAA GAAATAACTAACGATTCTAACGATCAAGAGATTATCAAAGGAAGCAAAAAGAAATACATTATTGGTGGCATTGTAGTCGC TGTCCTTATCGTGATTATTTTATTTTCTAGAAGCATTTTTCACTATTTCATACCTTTGGAAGATAAAAGCTCTCGTTTTA GCAAAGACAGGAATCTTTATGTCAATGATGAAATCCAAATAAGGCAAGAGTATAACCGATTACTGAAAGAACGGAATGAA AAAGGCAATATGATCGATAAGAATCTTTTCTTCAATGACGATCCCAATAGAACCTTATACAACTATTTGAATATTGCAGA AATTGAGGACAAAAACCCATTGAGGGCCTTTTATGAATGTATTAGTAATGGTGGCAACTATGAAGAATGTTTGAAACTTA TCAAAGACAAAAAACTTCAAGATCAAATGAAAAAGACTTTAGAGGCTTATAATGACTGCATCAAAAATGCCAAAACTGAA GAAGAAAGGATCAAGTGTTTAGATTTAATCAAAGATGAAAACCTGAAAAAAAGCTTACTGAACCAACAAAAAGTTCAAGT GGCGCTAGATTGTTTGAAAAACGCTAAAACCGATGAAGAACGAAACGAGTGCCTAAAACTCATAAATGACCCTGAGATTA GAGAGAAATTCCGTAAGGAATTAGAGCTTCAAAAAGAGCTTCAAGAGTATAAGGATTGTATCAAAAACGCCAAAACAGAA GCTGAGAAAAACAAATGCTTGAAAGGCTTGTCTAAAGAAGCTATAGAAAGATTGAAACAGCAAGCACTAGATTGTTTGAA AAACGCTAAAACCGATGAAGAACGAAACGAGTGCTTGAAAAATATTCCCCAAGACTTGCAAAAAGAACTACTAGCTGATA TGAGCGTCAAGGCTTACAAGGATTGCGTATCAAAAGCTAGAAATGAAGAAGAAAGAAAAGCTTGTGAGAAATTGCTCACC CCTGAAGCGAAAAAACTTTTAGAGCGACAAGCGCTAGATTGTTTGAAAAACGCTAAAACCGAAGCTGAGAAAAAAAGGTG TGTCAAAGATCTCCCTAAAGACTTACAAAGCGATATTTTAGCTAAAGAGAGCGTTAAAGCTTATAGAGACTGCGTATCTC AAGCCAGAACTGAAGCTGAGAAAAAAGAATGTGAGAAATTACTCACGCCTGAAGCGAAAAAACTTTTAGAAGAAGAAGCC AAAGAGAGCGTCAAAGCTTATTTGGATTGCGTATCTCAAGCCAAAACTGAAACTGAGAAAAAAGAATGCGAGAAATTGCT CACCCCTGAAGCGAGAAAAAAGTTAGAAGAAGCTAAAAAAAGCGTTAAAGCTTATTTGGATTGCGTATCTCAAGCCAAAA CTGAAACTGAGAAAAAAGAATGCGAGAAATTGCTCACGCCTGAAGCGAAAAAACTTTTAGAGCAACAAGCGCTAGATTGT TTGAAAAACGCTAAAACCGAAGCTGAGAAAAAAAGGTGTGTCAAAGATCTCCCTAAAGACTTGCAGAAAAAGGTTTTAGC CAAAGAGAGTCTTAAGGTTTATTTGGATTGCGTATCTCAAGCCAAAACTGAAGCTGAGAAAAAAGAATGCGAGAAATTGC TCACCCCTGAAGCGAAAAAACTTTTAGAAGAAGCCAAAGAGAGTCTTAAAGCTTATAAAGACTGCGTTTCAAGAGCTAGG AATGAAAAAGAGAAACAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAAAAAACTCTTAGAGCAACAAGCGCTAGATTG TTTGAAAAACGCTAAAACCGAAGCTGAGAAAAAAAGGTGTGTCAAAGATCTCCCTAAAGACTTGCAGAAAAAGGTTTTAG CCAAAGAGAGTCTTAAGGTTTATTTGGATTGCGTATCTCAAGCCAAAACTGAAGCTGAGAAAAAAGAATGCGAGAAATTG CTCACCCCTGAAGCGAAAAAACTTTTAGAAGAAGCCAAAGAGAGTCTTAAAGCTTATAAAGACTGCCTCTCTCAAGCTAG AAATGAAGAAGAAAGAAAAGCTTGTGAGAAATTGCTCACCCCTGAAGCGAGAAAACTCTTAGAGCAAGAAGTTAAGAAGA GCGTTAAGGCTTATTTGGATTGCGTATCTCAAGCCAAAACTGAAGCTGAGAAAAAAGAATGCGAGAAATTACTCACGCCT GAAGCGAGAAAGCTTTTAGAGCAACAAGCGCTAGATTGTTTGAAAAACGCTAAAACCGAAGCTGAGAAAAAAAGGTGTGT CAAAGATCTCCCTAAAGACTTGCAGAAAAAGGTTTTAGCTAAAGAGAGCGTTAAGGCTTATTTGGACTGCGTTTCAAGAG CTAGGAATGAAAAAGAGAAACAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAAAAAACTTTTAGAAGAAGCTAAAGAG AGTCTTAAAGCTTATAAAGACTGCGTATCTCAAGCTAGAAATGAAGAAGAAAGAAAAGCTTGTGAGAAATTACTCACGCC TGAAGCGAGAAAACTTTTAGAGCAAGAAGTTAAGAAGAGCGTTAAGGCTTATTTGGACTGCGTTTCAAGAGCTAGGAATG AAAAAGAGAAACAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAGAAAATTTTTAGCGAAGCAAGCACTAAGTTGTTTG GAAAAAGCTAGAAATGAAGAAGAAAGAAAAGCATGTCTTAAAAATATCCCTAAAGACTTACAGAAAAATGTTTTAGCTAA AGAGAGTCTTAAAGCTTATAAAGACTGCCTCTCTCAAGCTAGAAATGAAGAAGAAAGAAAAGCTTGTGAGAAATTGCTCA CCCCTGAAGCGAGAAAACTCTTAGAGCAAGAAGTTAAGAAGAGCGTTAAGGCTTATTTGGACTGCGTTTCAAGAGCTAGG AATGAAAAAGAGAAACAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAGAAAATTTTTAGCGAAAGAGCTCCAACAAAA AGATAAAGCGATCAAAGATTGCTTGAAAAACGCCGATCCTAACGACAGAGCAGCTATTATGAAGTGTTTGGATGGTTTGA GCGATGAAGAGAAGCTCAAATACCTGCAAGAAGCTAGAGAAAAGGCTGTCTTGGATTGTTTGAAAACGGCTAGGAGCGAT GAAGAAAAAAGGAAATGTCAAAACCTTTATAGCGATTTGATCCAAGAAATCCAAAATAAAAGGACACAAAGCAAACAAAA TCAATTGAGTAAAACAGAAAGATTGCATCAAGCAAGCGAGTGCTTGGATAACTTAGATGACCCTACTGATCAAGAAGCCA TAGAGCAATGTTTAGAAGGCTTGAGCGATAGTGAAAGAGCGCTAATTCTAGGAATTAAACGACAAGCTGATGAAGTGGAT CTGATTTATAGCGATCTAAGAAACCGCAAAACCTTTGATAACATGGCGGCTAAAGGTTATCCATTGTTGCCAATGGATTT CAAAAATGGCGGCGATATTGCCACTATTAACGCCACCAATGTTGATGCGGACAAAATAGCTAGCGATAATCCTATTTATG CTTCTATAGAGCCTGACATTACTAAGCAATACGAAACAGAAAAAACCATTAAGGATAAGAATTTAGAAGCTAAATTAGCT AAGGCTTTAGGTGGCAATAAAAAAGATGACGATAAAGAAAAAAGTAAAAAATCCACAGCAGAAGCTAGAGTAGAAAGCAA TAAGATAGACAAAGATGTCGCAGAAACTGCCAAAAATATCAGTGAAATCGCTCTTAAGAACAAAAAAGAAAAGAGTGGGG AATTTGTAGATGAAAATGGTAATCCCATTGATGACAAAAAGAAAACAGAAAAGCAAGATGAAACAAGCCCTGTCAAACAG GCCTTTATAGGCAAGAGTGATCCCACATTTGTTTTAGCGCAATACACCCCTATTGAAATCACTCTGACTTCTAAAGTAGA TGCCACTCTCACAGGTATAGTGAGTGGGGTTGTGGCCAAAGATGTATGGAACATGAACGGCACTATGATCTTACTAGACA AAGGCACTAAGGTGTATGGGAATTATCAAAGCGTGAAAGGTGGCACACCCATTATGACACGCTTAATGATAGTCTTTACT AAAGCCATTACGCCTGATGGTGTGATAATACCTCTAGCAAACGCTCAAGCAGCAGGTATGTTGGGTGAAGCAGGGGTAGA TGGCTATGTGAATAATCACTTTATGAAGCGCATAGGCTTTGCTGTGATAGCAAGCGTGGTTAATAGCTTCTTGCAAACTG CGCCTATCATAGCTCTAGATAAACTCATAGGCCTTGGCAAAGGTAGAAGTGAAAGGACACCTGAATTTAATTACGCTTTG GGTCAAGCTATCAATGGTAGTATGCAAAGTTCAGCTCAGATGTCTAATCAAATTCTAGGGCAACTGATGAATATCCCCCC AAGTTTTTACAAAAATGAGGGCGATAGTATTAAAATTCTCACAATGGACGATATTGATTTTAGTGGCGTATATGATGTTA AAATTACCAACAAATCTGTGGTAGATGAAATTATCAAACAAAGCACTAAAACTTTGTCTAGAGAGCATGAAGAAATCACC ACAAGCCCCAAAGGTGGCAATTAA Protein sequence : MNEENDKLETSKKTQQHSPQDLSNEETTKANRFEDSSKESKESSDHHLDNSTETKTNFDEEKSEETQTQMDSGGNETSES SNLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANH FEDSSKESNESSDHHLDNSTETKTNFDEYKSEETQTQMDSGGNETSESSNLADKLFKKARKLVDNKRPFTQQKNLDEEIQ EPNEEDDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFEDSSKESKKSSDHHLDNYTETKANFDEYKSE EITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNE KGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTE EERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTE AEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSKARNEEERKACEKLLT PEAKKLLERQALDCLKNAKTEAEKKRCVKDLPKDLQSDILAKESVKAYRDCVSQARTEAEKKECEKLLTPEAKKLLEEEA KESVKAYLDCVSQAKTETEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKTETEKKECEKLLTPEAKKLLEQQALDC LKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKVYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSRAR NEKEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKVYLDCVSQAKTEAEKKECEKL LTPEAKKLLEEAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTP EARKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKQECEKLLTPEAKKLLEEAKE SLKAYKDCVSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQALSCL EKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRAR NEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARSD EEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVD LIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLA KALGGNKKDDDKEKSKKSTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQ AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFT KAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYAL GQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT TSPKGGN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HP0527 | BAD13943.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 92 |
| HP0527 | BAD14052.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 91 |
| HP0527 | BAD13998.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 91 |
| cagY | YP_005774542.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 90 |
| HP0527 | BAD13833.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 90 |
| cagY | YP_005777271.1 | cag pathogenicity island protein Y VirB10-like protein | Virulence | cag PAI | Protein | 0.0 | 90 |
| cagY | AGC69786.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 90 |
| HP0527 | BAD13970.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 89 |
| HP0527 | NP_207323.1 | cag pathogenicity island protein (cag7) | Virulence | cag PAI | Protein | 0.0 | 88 |
| HP0527 | BAD14026.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 88 |
| cagY | AGC69792.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 88 |
| HP0527 | BAD13779.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 88 |
| cagY | YP_005779063.1 | cag island protein | Virulence | cag PAI | Protein | 0.0 | 88 |
| HP0527 | BAD13888.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 87 |
| cagY | AGC69785.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 87 |
| cagY | AGC69788.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 87 |
| cagY | AGC69789.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 87 |
| cag-Y | AAF80198.1 | Cag-Y | Virulence | cag PAI | Protein | 0.0 | 86 |
| HP0527 | BAD13806.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 86 |
| HP0527 | BAD13915.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 84 |
| orf13/14 | NP_223194.1 | cag island protein | Virulence | cag PAI | Protein | 0.0 | 84 |
| HP0527 | BAD13860.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 83 |
| cagY | YP_005775730.1 | cag pathogenicity island protein Y VirB10-like protein | Virulence | cag PAI | Protein | 0.0 | 83 |
| cagY | AGC69787.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 83 |
| cagY | YP_003728737.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 82 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPSH169_02700 | YP_006225732.1 | cag pathogenicity island protein (cag7) | VFG0287 | Protein | 0.0 | 88 |
