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Name : HPSH169_01150 (HPSH169_01150) Accession : YP_006225428.1 Strain : Helicobacter pylori Shi169 Genome accession: NC_017740 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : - COG ID : - EC number : - Position : 218766 - 220673 bp Length : 1908 bp Strand : + Note : COG3843 Type IV secretory pathway, VirD2 components (relaxase) DNA sequence : ATGGCGTTAGAAAAAAGTTATAAAGACTTTGAAAGCGATGAGCTTTTTGATTATGAGATCATCAAGCCCAAAAAGACGCT TAAGGTACAATACACTTATGCTAAACGCTACTATAAAGAAGTGGAAAAGTTTGCTAAAAATTTAACTCAACTTACACAAG AAGAATTTATGCGTTTAAGAGATCCGCAAAAACAAGTGGTCATCAAAAACATAGGCAATATGACACGCTTGCATTCAAAA AGGGCGATGGATTATATCGCTAAACATGGTGAGCTAGTGAGAGATGAATTTTTTAATGAAGTTAATTATAATGATATAGC AGAGCAATGGAATGAGCAATTTGAAAAATTATTAGAAAATAAGAGCCGTGTTAAAAATTGTGCTTTACATCTAGTGTTTA GCATTGATGAAAATTGTAATGAAAAAAATTTAAAAGCTTTAGAATTAAGCGTGTATCAAACACTCACTAACACGCTAGGT TATGATTATCCTTTTATAATGAAACTCCATACACACCAAAACAATCCGCATGCACATGTGATTATCAACAAGACTAACAG AATTACCAATAAGCAACTACGCTTTAATTCTAAAGACAGCTGTAAAGAGTTTTACCACACACTAAGAGAAACATTTAAAG ATTATTTATTTGCTAACTCAAAAGGCGAATTGCAATATTCTAACACGCCTAATATTTATAAGGTGATTAAAGACATAGAA ACAGAGTTAGATACGCTAGAAAAACAGGCTAGAAACAATAAGAGTTTTAGGTATGAAAACTATTTCTATAAAGTTTTGGG CAGTGCAACTTCTCAAATAGAAAGCTTGAAAAAAAGAGAAAATGCCCTATCTGATCATTTAGATAGTCTAAAAAGTTTAT TAGAAAAAACACATTGGGAAAAAGAAAAATTCACGCCCCCAATAAATGAAAAAGAACTTAACCAACAACTTAAAGAAATA AAATGGTTAAATAAAGAATCTTTAACCCCCAAAAACACTTATAAAAAAACTCAAAAATTGGTTGTCTGTAAAAGCCCTTT AATAAAAGATTATCTTTATACTACCAAAAAACTTTTTGCCACACAGAAAAAGATTATAGCTTTAGAGAAAGATTATAAAG ATTTAAAAGTCTTGAAGGAAGAATTTAGCAAAGATTTAGAAGCTGATTTATCCCATTCAAAAAAACGCTTTGAGCTTTAC ACTAGACTAAAAAGCATGAGCAAAGTTTTTATAAGCAAAAGCATTGTTAAAAATTTAGAAAAAATTGCTTTAAATTTTAA AAGCGATAGACATAGTATTTCGCAAAGAGCTTTTGAATTTTTTAGGTATATGAATTATCAAAATTTAAGCTTGACTGATA AAGGCAATATGTTTTTAGTGGCTAAGTTTTTTAAAGATAGTGCTTTACTTGTTAATATTGCTAGGTTTGAAATGAAAAAG ATAGATGATAGTGTTAAAAATTCTAACCCACAAGGCAATTTATTAGACAAACAAGCTTGGCTTAATCTTTTAGAACATTT AAAAAGACTTGAAGAGAAAAACTATTGTTTTGCTAAGAAGCGAAAAGAATTCTTAGAAACTAGAGCTATGGAGCTATCAA AAGATTTAAAATTTTTAACACAGGCCAATGAAAATGATTTGCCTATTTATGAAAGAGGGCAAAGGGATAAAATCATTAAA CGCTGTGAAAAATCGCTTAATTTTTTGCAGAAAGAATTACAATGCTTTAAAACCTTATTGAAAAGTGCAAGTATAGCTTT AGAAAACTTGCAAAGCAACCATCAAATCACAGCCGTTACACAAGACACACAAGAAAACACAAACGCACTCAAAAATACCA CTCAAGATTTTAACAAAACTACCAATGAACCCACAAACCCTAACAATAACCATGAAATGGATTTTTAA Protein sequence : MALEKSYKDFESDELFDYEIIKPKKTLKVQYTYAKRYYKEVEKFAKNLTQLTQEEFMRLRDPQKQVVIKNIGNMTRLHSK RAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLENKSRVKNCALHLVFSIDENCNEKNLKALELSVYQTLTNTLG YDYPFIMKLHTHQNNPHAHVIINKTNRITNKQLRFNSKDSCKEFYHTLRETFKDYLFANSKGELQYSNTPNIYKVIKDIE TELDTLEKQARNNKSFRYENYFYKVLGSATSQIESLKKRENALSDHLDSLKSLLEKTHWEKEKFTPPINEKELNQQLKEI KWLNKESLTPKNTYKKTQKLVVCKSPLIKDYLYTTKKLFATQKKIIALEKDYKDLKVLKEEFSKDLEADLSHSKKRFELY TRLKSMSKVFISKSIVKNLEKIALNFKSDRHSISQRAFEFFRYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKK IDDSVKNSNPQGNLLDKQAWLNLLEHLKRLEEKNYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIK RCEKSLNFLQKELQCFKTLLKSASIALENLQSNHQITAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNHEMDF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virD2-1 | YP_002301087.1 | relaxase | Virulence | cag PAI | Protein | 0.0 | 94 |
