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Name : lysS (HPSH169_00890) Accession : YP_006225382.1 Strain : Helicobacter pylori Shi169 Genome accession: NC_017740 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 173960 - 175465 bp Length : 1506 bp Strand : + Note : COG1190 Lysyl-tRNA synthetase (class II) DNA sequence : ATGTTTTCTAACCAATACATCCAACAACGCATCCATAAAGCCAACAGCTTGAGAGAAGAAGGGAAAAACCCTTATAAAAA TGGCTTGAAACGAAGCCTTACAAACGCCGCTTTTTTAGAAAAATACGCTTATGTTAAGGGTTTAGAAGAGCCTAAAGACA AGGAAAAATGCGAGAGTATTGTAGGGAGGGTCAAGCTTTTGCGTTTAATGGGTAAGGCTTGTTTTATTAAAATTGAAGAT GAAAGCGCGATTTTGCAAGCTTATGTTTCGCAAAATGAATTGAATGATGAGTTTAAAAGCCTGAAAAAGCATTTAGAAGT GGGCGATATTGTGTTGGTGAAAGGTTTCCCTTTTGCTACCAAAACCGGTGAATTGAGCGTTCATGCCCTAGAATTTCATA TTTTAAGCAAAACCATTGTGCCTTTACCCGAAAAATTCCATGGACTGAGCGATATAGAATTGCGTTACCGCCAGCGCTAT TTGGATTTGATAGTCAATCCTAGCGTTAAAGATGTGTTTAAAAAACGCAGTTTGATTGTTTCTAGCGTGCGGAAATTTTT TGAAATGGAAGGGTTTTTAGAAGTGGAAACCCCCATGATGCACCCCATTCCTGGCGGGGCGAACGCAAGGCCTTTTATCA CTTACCATAACGCTTTAGAAATTGAAAGGTATTTAAGAATCGCTCCAGAATTATACCTCAAACGCTTGATTGTGGGGGGT TTTGAAGCGGTGTTTGAAATCAATCGCAATTTCAGGAATGAGGGCATGGATCACAGCCATAACCCCGAATTTACGATGAT TGAGTTTTATTGGGCGTATCACACTTATGAAGATTTGATTGAACTCAGTAAGAAATTATTTGACTACTTGTTAAAGACTT TGAACTTACCTTCAAAAATCATTTATGACGATATGGAAGTGGATTTCAACCAAACGAGCGTGATTTCCTATTTGGACGCT TTAGAAACAATAGGGGGCATTAGTAAGGATATTTTAGAAAAAGAAGACAGGCTTTTGGCTTATTTGTTAGAGCAAGGCAT CAAAGTAGAGCCAAATCTCACTTATGGTAAATTGCTCGCTGAAGCGTTTGATCATTTTGTAGAGCACCAGCTCATTAACC CCACTTTTGTAACCCAATACCCCATTGAGATTAGCCCCCTAGCCAGACGCAACGATAGTAACCCTAATATTGCTGACAGG TTTGAATTGTTTATTGCCGGGAAAGAAATCGCTAACGGTTTTAGCGAGTTGAACGATCCTTTAGATCAATTAGAACGCTT TAAAAATCAAGTGGCTGAAAAAGAAAAAGGCGATGAAGAAGCCCAATACATGGATGAAGATTATGTGTGGGCGTTAGCCC ATGGAATGCCCCCCACTGCAGGGCAAGGCATAGGCATTGATAGATTAGTGATGTTACTCACTGGAGCTAAAAGCATTAAA GATGTGATTTTATTCCCAGCGATGCGTCCTGTTAAAAACGATTTTAATGTGGAGAGTGAAGAATAA Protein sequence : MFSNQYIQQRIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAYVKGLEEPKDKEKCESIVGRVKLLRLMGKACFIKIED ESAILQAYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSVHALEFHILSKTIVPLPEKFHGLSDIELRYRQRY LDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEIERYLRIAPELYLKRLIVGG FEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKKLFDYLLKTLNLPSKIIYDDMEVDFNQTSVISYLDA LETIGGISKDILEKEDRLLAYLLEQGIKVEPNLTYGKLLAEAFDHFVEHQLINPTFVTQYPIEISPLARRNDSNPNIADR FELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIK DVILFPAMRPVKNDFNVESEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 9e-106 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_006225382.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 5e-106 | 50 |
