|
Name : HPSH169_00510 (HPSH169_00510) Accession : YP_006225306.1 Strain : Helicobacter pylori Shi169 Genome accession: NC_017740 Putative virulence/resistance : Resistance Product : cystathionine gamma-synthase Function : - COG functional category : - COG ID : - EC number : 4.4.1.8 Position : 101360 - 102502 bp Length : 1143 bp Strand : - Note : COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases DNA sequence : ATGCGCATGCAAACAAAATTAATCCATGGGGGCATTAGTGAGGATGCGATAACGGGGGCGGTGAGCGTGCCTATTTATCA AACTTCCACCTACCGCCAAGACGCCATAGGCCGCCACAAGGGCTATGAATACTCTCGCTCAGGCAACCCCACGCGCTTTG CTTTAGAAGAACTCATCGCTGATTTAGAAGGGGGGGTTAAGGGGTTTGCTTTTGCCTCTGGTTTAGCTGGGATCCATGCC GTTTTTTCCCTCTTGCAATCAGGCGATCATGTGCTATTAGGCGATGATGTCTATGGGGGGACTTTTCGCTTGTTCAATAA AGTGCTTGTCAAAAACGGGCTTTCTTGCACCATTATAGACACTAGCGATCTATCCCAAATCAAAAAGGCTATCAAGCCCA ACACCAAAGCCCTTTATTTAGAAACCCCTAGTAACCCCTTGCTTAAAATCACGGATTTAGCACAATGCGCTAGTGTTGCT AAAGATCATGGTTTGCTCACTATCGTGGATAATACCTTTGCCACCCCCTATTGCCAAAACCCGCTTCTTTTGGGAGCGGA CATTGTAGTGCATAGCGGCACCAAATACTTAGGCGGGCATAGCGATGTGGTCGCTGGGCTTGTAACCACTAATAATGAAG CGCTAGCCCAAGAGATCGCTTTTTTCCAAAACGCTATCGGTGGGGTTTTAGGCCCTCAAGACAGCTGGCTGTTGCAAAGA GGGATTAAAACGCTAGGATTGCGCATGGAGGCCCATCAAAAAAACGCCCTTTGCGTGGCTGAGTTTTTAGAAAAACACCC TAAAGTGGAGAAGGTCTATTACCCGGGCTTGAGCGCTCACCCTAACCACGAGCTGGCCAAAAAACAGATGCGTGGCTTTA GCGGGATGCTCTCTTTCACTCTCAAAAACGACAGCGAGGCGGTTGCTTTTGTAGAAAGCCTTAAACTATTCATTTTAGGC GAGAGTTTGGGCGGGGTGGAAAGTTTGGTGGGGATTCCAGCATTCATGACCCATGCGTGTATCCCCAAAGCGCAACGAGA AGCTGCCGGGATTAGAGATGGCCTGGTGCGCTTGTCTGTGGGGATTGAGCATGAACAGGATTTGTTAGAAGATTTAGAGC AAGCGTTCGCTAAAATAGGCTAA Protein sequence : MRMQTKLIHGGISEDAITGAVSVPIYQTSTYRQDAIGRHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHA VFSLLQSGDHVLLGDDVYGGTFRLFNKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVA KDHGLLTIVDNTFATPYCQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQR GIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLSAHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILG ESLGGVESLVGIPAFMTHACIPKAQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAR0460 | YP_039909.1 | Cys/Met metabolism PLP-dependent enzyme | Not tested | vSa¥á | Protein | 2e-97 | 55 |
| SAS0418 | YP_042545.1 | Cys/Met metabolism PLP-dependent enzyme | Not tested | vSa¥á | Protein | 8e-99 | 55 |
| metB | YP_281510.1 | cystathionine beta-lyase | Not tested | Not named | Protein | 2e-74 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPSH169_00510 | YP_006225306.1 | cystathionine gamma-synthase | BAC0207 | Protein | 2e-62 | 44 |
