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Name : ureB (HPSH417_00340) Accession : YP_006223728.1 Strain : Helicobacter pylori Shi417 Genome accession: NC_017739 Putative virulence/resistance : Virulence Product : urease subunit beta Function : - COG functional category : - COG ID : - EC number : 3.5.1.5 Position : 67499 - 69208 bp Length : 1710 bp Strand : - Note : COG0804 Urea amidohydrolase (urease) alpha subunit DNA sequence : ATGAAAAAGATTAGCAGAAAAGAATATGCTTCTATGTATGGCCCTACTACAGGCGATAAAGTGAGATTGGGCGATACAGA CTTGATCGCTGAAGTAGAACATGACTACACCATTTATGGCGAAGAGCTTAAATTCGGTGGCGGTAAAACTTTAAGAGAAG GCATGAGCCAATCCAACAACCCTAGCAAAGAAGAACTGGATCTAATCATCACTAACGCTTTAATCGTGGATTATACCGGT ATTTATAAAGCGGATATTGGTATTAAAGATGGCAAAATCGCTGGCATTGGTAAAGGCGGTAACAAAGACACGCAAGATGG CGTTAAAAACAATCTTAGCGTGGGTCCTGCTACTGAAGCCTTAGCTGGTGAAGGTTTGATCGTAACTGCTGGTGGTATTG ACACACACATCCACTTCATCTCCCCCCAACAAATCCCTACAGCTTTTGCAAGCGGTGTAACAACGATGATTGGTGGCGGA ACTGGTCCTGCTGATGGCACTAACGCAACCACTATCACTCCAGGCAGAAGAAATTTAAAATTTATGCTCAGAGCGGCTGA AGAATATTCCGTGAACTTAGGTTTCTTAGCTAAAGGTAACGCTTCTAACGATGCGAGCTTAGCCGATCAAATTGAAGCCG GTGCGATTGGTCTTAAAATCCACGAAGACTGGGGAACAACTCCTTCTGCAATCAATCATGCGTTAGATGTTGCAGACAAA TACGATGTGCAAGTCGCTATCCACACAGACACTTTGAATGAAGCCGGTTGTGTAGAAGACACTATGGCAGCCATTGCCGG ACGCACTATGCACACTTACCACACTGAAGGCGCTGGCGGCGGACACGCTCCTGATATTATTAAAGTGGCCGGCGAACACA ACATTCTGCCCGCTTCCACTAACCCCACTATCCCTTTCACCGTGAATACAGAAGCAGAGCACATGGACATGCTTATGGTG TGCCACCACTTGGATAAAAACATTAAAGAAGATGTCCAGTTCGCTGATTCAAGGATTCGCCCTCAAACCATTGCGGCTGA AGACACTTTGCATGACATGGGGATTTTCTCAATCACTAGTTCTGACTCTCAAGCTATGGGTCGTGTGGGTGAAGTTATCA CCAGAACTTGGCAAACAGCTGACAAAAACAAAAAAGAATTTGGCCGCTTGAAAGAAGAAAAAGGCGATAACGACAACTTC AGGATCAAACGCTACTTGTCTAAATACACCATTAACCCAGCGATCGCTCATGGGATTAGCGAGTATGTAGGTTCTGTAGA AGTGGGCAAAGTGGCTGACTTGGTATTGTGGAGTCCCGCATTCTTTGGCGTAAAACCCAACATGATCATCAAAGGCGGGT TCATTGCGTTGAGTCAAATGGGTGATGCGAACGCTTCTATCCCTACCCCACAACCGGTTTATTACAGAGAAATGTTCGCT CATCATGGTAAAGCCAAATACGATGCAAACATCACTTTTGTATCCCAAGCGGCTTATGACAAAGGCATTAAAGAAGAATT AGGGCTTGAAAGACAAGTGTTGCCGGTAAAAAATTGCAGAAACATCACTAAAAAAGACATGCAATTCAACGACACTACCG CTCACATTGAAGTCAATTCTGAAACTTACCATGTGTTCGTGGATGGCAAAGAAGTAACTTCTAAACCAGCCAATAAAGTG AGCTTGGCGCAACTCTTTAGTATTTTCTAG Protein sequence : MKKISRKEYASMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSKEELDLIITNALIVDYTG IYKADIGIKDGKIAGIGKGGNKDTQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGG TGPADGTNATTITPGRRNLKFMLRAAEEYSVNLGFLAKGNASNDASLADQIEAGAIGLKIHEDWGTTPSAINHALDVADK YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTYHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMV CHHLDKNIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNF RIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNSETYHVFVDGKEVTSKPANKV SLAQLFSIF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 9e-160 | 62 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 9e-160 | 62 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 1e-146 | 60 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-146 | 60 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 2e-146 | 60 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-146 | 60 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureB | YP_006223728.1 | urease subunit beta | VFG0270 | Protein | 0.0 | 99 |
