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Name : HPSH417_02605 (HPSH417_02605) Accession : YP_006224168.1 Strain : Helicobacter pylori Shi417 Genome accession: NC_017739 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein CagD Function : - COG functional category : - COG ID : - EC number : - Position : 526779 - 527402 bp Length : 624 bp Strand : - Note : - DNA sequence : TTGATCAACAATAATAGTAATAAAAAACTAAGAGACTTTTTTTTGAAAGTTCTCTTAAGTCTCGTTGTTTTCAGCTCGTA TGGGTCAGCAAATGATGATAATCAAGCGAAAAAAGAAGCGCTAGAAAAAGAAAAAAACACTCCTAGTGGGCGTGTTTATA CGAATTTAGATTTTGATAGTTTCAAGGCGACTATCAAAAATTTGAAAGACAAGAAAGTAACTTTCAAAGAAGTCAATCCC GATATTATCAAAGATGAAGTTTTTGACTTCGTGATTGTCAATAGAGTCCTTAAAAAAATAAAGGATTTGAAGCATTACGA TCCAATTATTGAAAAAATCTTTGATGAAAAAGGTAAAGAAATGGGGTTGAATGTAGAATTACAGATCAATCCTGAAGTGA AAGACTTTTTTACTTTCAAAAGCATCAGCACGACCAACAAACAACGCTGCTTTCTGTCATTGCGCGGAGAAACAAGAGAA ATTCTATGCGATGATAAGCTATATAATGTTTTGTTGGCCGTATTCAATTCTTATGACCCTAATGATCTTTTGAAACATAT TAGCACTATAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTATATCTATAA Protein sequence : MINNNSNKKLRDFFLKVLLSLVVFSSYGSANDDNQAKKEALEKEKNTPSGRVYTNLDFDSFKATIKNLKDKKVTFKEVNP DIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETRE ILCDDKLYNVLLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HP0545 | BAD14016.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-80 | 99 |
| cag24 | AAR03937.1 | Cag24 | Virulence | cag PAI | Protein | 3e-79 | 99 |
| cag24 | AAR03879.1 | Cag24 | Virulence | cag PAI | Protein | 5e-80 | 98 |
| cagD | YP_005774526.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-79 | 98 |
| HP0545 | BAD13851.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 9e-80 | 98 |
| HP0545 | BAD13961.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-80 | 98 |
| HP0545 | BAD13988.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-79 | 98 |
| cagD | YP_003728719.1 | cag pathogenicity island protein D | Virulence | cag PAI | Protein | 2e-78 | 98 |
| HP0545 | BAD13933.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-79 | 97 |
| cagD | YP_005775745.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-79 | 97 |
| HP0545 | BAD13906.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 4e-80 | 97 |
| HP0545 | BAD13878.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 4e-79 | 97 |
| cagD | YP_005779048.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-79 | 97 |
| HP0545 | BAD14070.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-79 | 97 |
| cag24 | AAR03907.1 | Cag24 | Virulence | cag PAI | Protein | 2e-79 | 97 |
| HP0545 | BAD13797.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-79 | 97 |
| cag24 | AAR03968.1 | Cag24 | Virulence | cag PAI | Protein | 1e-78 | 97 |
| HP0545 | BAD13824.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-79 | 97 |
| cagD | NP_223211.1 | cag island protein | Virulence | cag PAI | Protein | 9e-77 | 97 |
| HP0545 | BAD14043.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 7e-78 | 96 |
| cagD | YP_005777286.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 7e-78 | 96 |
| HP0545 | NP_207341.1 | cag pathogenicity island protein (cag24) | Virulence | cag PAI | Protein | 1e-78 | 96 |
| cagD | AAF80210.1 | CagD | Virulence | cag PAI | Protein | 7e-76 | 96 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPSH417_02605 | YP_006224168.1 | cag pathogenicity island protein CagD | VFG0304 | Protein | 5e-79 | 96 |
