Gene Information

Name : HPSH417_02575 (HPSH417_02575)
Accession : YP_006224162.1
Strain : Helicobacter pylori Shi417
Genome accession: NC_017739
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein L
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 519557 - 520264 bp
Length : 708 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAACACTCGTGAAAAATACCATATCTTCTTTTTTGCTATTGTCTGTTTTGATGGCAGAAGATATAACAAGCGGCTT
AAAGCAACTTGATAGAACCTACAAAGAGACCAACCAACAAGCACTCAAAAACTTAGATGAGATTTTTTCAACCACTAGCC
CTAGCGCTAATATAGGTGAAGAAGATGCTCTAAACATCCAAAAAGCAGCCATTGCTTTGAGGGGAGATTTAGCGTTATTG
AAAGCCAATTTTGAAGCGAATGAGTTATTTTTCATCTCAGAAGATGTGATTTTCAAGACTTATATGTCTAGCCCTGAACT
TTTATTAACCTATATAAAAATCAATCCTTTAGACCAAAAGACTGCTGAGCAACAATGCGGAATATCCGATAAAGTTTTAG
TTCTTTATTGTGAGGGGAAGCTGAAAATCGAGCAAGAAAAACAGAATATAAGAGAGCGTTTAGAAACTTCTCTAAAGGCG
TATCAGAGCAACATTGGAGGTACAGCTTCCTTAATCACTGCTTCACAGACGCTTGTAGAAAGCCTAAAGAATAAAAATTT
CATCAAAGGAATCAGAAAGCTTATGTTAGCTCACAACAAGGTCTTTTTAAATTATTTAGAGAAGTTGGACGCATTAGAAA
GATCCCTAGAACAAAGTAAGCGACAATACCTACAAGAAAGGCAATCAAGTAAGATTATTGTTAAATGA

Protein sequence : 
MKTLVKNTISSFLLLSVLMAEDITSGLKQLDRTYKETNQQALKNLDEIFSTTSPSANIGEEDALNIQKAAIALRGDLALL
KANFEANELFFISEDVIFKTYMSSPELLLTYIKINPLDQKTAEQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSLKA
YQSNIGGTASLITASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEKLDALERSLEQSKRQYLQERQSSKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0539 BAD14037.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-99 97
cagL YP_003728725.1 cag pathogenicity island protein L Virulence cag PAI Protein 7e-100 97
cagL AGC69801.1 cag pathogenicity island protein L Virulence cag PAI Protein 4e-100 97
HP0539 BAD14064.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-100 97
HP0539 BAD13791.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-99 96
cagL NP_223205.1 cag island protein Virulence cag PAI Protein 3e-98 96
HP0539 BAD14010.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-99 96
cagL YP_005779054.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-99 96
HP0539 BAD13818.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-99 96
HP0539 BAD13845.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-98 96
cagL YP_005774532.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-99 96
HP0539 BAD13872.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-99 96
cag18 AAR03931.1 Cag18 Virulence cag PAI Protein 1e-98 96
cagL YP_005777280.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-99 96
HP0539 NP_207335.1 cag pathogenicity island protein (cag18) Virulence cag PAI Protein 5e-99 96
HP0539 BAD13982.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-99 96
cagL AAC44697.1 CagL Virulence cag PAI Protein 9e-99 96
cagL YP_005775739.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-99 96
HP0539 BAD13955.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-99 96
cag18 AAR03901.1 Cag18 Virulence cag PAI Protein 3e-98 95
HP0539 BAD13900.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-98 95
cag18 AAR03962.1 Cag18 Virulence cag PAI Protein 1e-98 95
cag18 AAR03873.1 Cag18 Virulence cag PAI Protein 6e-99 95
HP0539 BAD13927.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-98 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH417_02575 YP_006224162.1 cag pathogenicity island protein L VFG0298 Protein 2e-99 96