Gene Information

Name : HPSH417_02570 (HPSH417_02570)
Accession : YP_006224161.1
Strain : Helicobacter pylori Shi417
Genome accession: NC_017739
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagN
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 518554 - 519474 bp
Length : 921 bp
Strand : +
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTTTTTAGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTACCGAGTGAATACAAAAAATTAGTGGCTTTAGGCTTTAAAAAAATCAAAACACTCTATCAAAGACATGACG
ACAAAGAAGTTACAGAAGAGGAAAAAAAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCG
GAGCAAATTCAAAAAAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGACTAAGCACAAAGG
ATTACAAGAATTAAACGAAACTAACGCTAACCCTTTGAATGGCAATCCTAATAGTAATTCTTCCACTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTGAAACCTGCTGCTCCGCTTGTGCCTAAT
GAGTGGAGAACACCTGAAATTGAAACCATTATCAATGAGTGTATTCTTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGGCATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAGCTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCGTGT
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAGTTTGGAGC
TACTGATACAAAAAAAAATGAAGCAAAAGATGCAGCATTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYFLVIYGGLNAINTALLPSEYKKLVALGFKKIKTLYQRHDDKEVTEEEKKFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSIQKKATKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEMINKVNEAFVKPAAPLVPN
EWRTPEIETIINECILSSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNYQDTTNASEFGATDTKKNEAKDAAFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-116 98
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-110 98
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-110 97
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-114 97
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-109 97
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-109 97
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-109 97
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-110 97
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 1e-115 97
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-109 96
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-109 96
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-109 96
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-112 95
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 3e-109 95
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-112 95
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 4e-113 95
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-115 95
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 1e-113 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 1e-112 95
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 3e-113 95
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 1e-113 94
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-119 94
cagN AAF80207.2 CagN Virulence cag PAI Protein 8e-114 94
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 2e-113 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH417_02570 YP_006224161.1 cag pathogenicity island protein CagN VFG0297 Protein 2e-113 95