Gene Information

Name : HPSH417_02565 (HPSH417_02565)
Accession : YP_006224160.1
Strain : Helicobacter pylori Shi417
Genome accession: NC_017739
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagM
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 517409 - 518539 bp
Length : 1131 bp
Strand : +
Note : -

DNA sequence : 
ATGCTTGCAAAAATCGTTTTTAGCTCGTTGGTTGCGTTTGGAGTTTTGTCGGCTAATGTGGAGCAGTTTGGTTCATTTTT
CAATGAGATTAAAAAAGAACAAGAAGAGGTGGCTGCAAAAGAAGACGCTCTTAAGGCCCGCAAAAAGCTCTTAAATAATA
CGCATGATTTCTTAGAAGATTTGATTTTTAGAAAACAAAAAATCAAAGAGCTTGTGGATCATAGAGCTAAAGTTCTTTTA
GATTTAGAAAACAAATACAAAAAAGAAAAAGAGGCTCTAGAGAAAGAGACAAGAGGTAAGATCCTTACTGCTAAGTCAAA
GGCTTATGGGGATCTAGAGCAAGCCTTAAAAGATAACTCTCTCTATAAGAAACTTCTTCCTAACCCTTATGCCTATGTTT
TAAACCAAGAAACATTCACCAAAGAAGATAAAGAGCGTTTGAGCTATTACTACCCACAAGTCAAAAACAGCAACATTTTC
AAAAAAACTACCGCTACCACTAAAGATAAGGCTCAGGCTTTGCTTCAAATGGGTGTGTTTTCTTTAGATGAAGAACAAAA
CAAAAAAGCGAGCCGATTAGCTTTATCTTACAAGCAAGCGATTGAAGAATATTCCAATAACATTTCTAATTTATTGAGCA
GAAAAGAATTGGATAATATAGATTATTACTTACAGCTTGAAAGAAACAAGTTTGACTCCAAAGCAAAAGATATCGCTCAA
AAAGCTACTAACGCGCTTATTTTTAACTCGGAACGCTTGGCGTTTAGCATGGCGATTGATAAGATCAATGAGAAATACTT
AAGGGGCTATGAGGCTTTTTCTAACTTGTTGAAAAATGTCAAAGATGATGTGGAATTGAATACTCTGACTAAAAACTTTA
CCAATCAAAAATTGAGTTTCGCTCAAAAACAAAAATTGTGTTTGTTGGTTTTAGACAGCTTCAATTTTGATACCCAATCC
AAAAAATCTATATTAAAAAAGACTAATGAATACAATATTTTCGTAGATAGCGATCCTATGATGAGCGACAAAACAACTAT
GCAAAAAGAACACTACAAGATATTTAATTTCTTCAAAACAGTGCTTTCTGCATACCGAAACAATGTTGCCAAGAATAATC
CCTTTGAATAG

Protein sequence : 
MLAKIVFSSLVAFGVLSANVEQFGSFFNEIKKEQEEVAAKEDALKARKKLLNNTHDFLEDLIFRKQKIKELVDHRAKVLL
DLENKYKKEKEALEKETRGKILTAKSKAYGDLEQALKDNSLYKKLLPNPYAYVLNQETFTKEDKERLSYYYPQVKNSNIF
KKTTATTKDKAQALLQMGVFSLDEEQNKKASRLALSYKQAIEEYSNNISNLLSRKELDNIDYYLQLERNKFDSKAKDIAQ
KATNALIFNSERLAFSMAIDKINEKYLRGYEAFSNLLKNVKDDVELNTLTKNFTNQKLSFAQKQKLCLLVLDSFNFDTQS
KKSILKKTNEYNIFVDSDPMMSDKTTMQKEHYKIFNFFKTVLSAYRNNVAKNNPFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0537 BAD13898.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-150 99
cagM YP_005774534.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-151 99
HP0537 BAD13789.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-151 99
HP0537 BAD13953.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-150 99
cagM YP_005779056.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-151 99
cagM AGC69800.1 cag pathogenicity island protein M Virulence cag PAI Protein 2e-149 98
cagM AAC44695.1 CagM Virulence cag PAI Protein 1e-149 98
cag16 AAR03899.1 Cag16 Virulence cag PAI Protein 1e-149 98
cagM NP_223203.1 cag island protein Virulence cag PAI Protein 5e-149 98
cag16 AAR03929.1 Cag16 Virulence cag PAI Protein 9e-150 98
cagM YP_003728727.1 cag pathogenicity island protein M Virulence cag PAI Protein 2e-149 98
HP0537 BAD13980.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-150 98
HP0537 NP_207333.1 cag pathogenicity island protein (cag16) Virulence cag PAI Protein 2e-149 98
HP0537 BAD13870.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-150 98
HP0537 BAD13925.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-149 98
cagM YP_005775737.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-150 98
HP0537 BAD13843.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-150 98
cag16 AAR03960.1 Cag16 Virulence cag PAI Protein 3e-149 98
cagM YP_005777278.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-150 98
cag16 AAR03871.1 Cag16 Virulence cag PAI Protein 2e-149 98
HP0537 BAD14008.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-147 97
HP0537 BAD13816.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-148 97
HP0537 BAD14035.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-148 97
HP0537 BAD14062.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-142 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH417_02565 YP_006224160.1 cag pathogenicity island protein CagM VFG0296 Protein 8e-150 98