Gene Information

Name : HPSH417_02525 (HPSH417_02525)
Accession : YP_006224152.1
Strain : Helicobacter pylori Shi417
Genome accession: NC_017739
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein W
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 509480 - 511087 bp
Length : 1608 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTAATATCAAAAGGATTTTTTTAATAACGATCATAAGTTTTTTTCTCATTGTTCCTAATTGGTTGAAAGCTATTGA
TTTGCCCATTGTTTCAAATCTCAAAATTTACCAAACAGTTTATTGCATGCTGATACCGAGTTATGTTTTAACCAACAAAA
GTTTTGCAGATATTTTGACAGGTTATACATCTATTGGCGCATCAGGGAGTGGAAAGAGTTCAGGGCAGGGTGTGATCGAA
GCGCTTAGTGCACCATTAGCTACAAGTTTAGCCACTAGCAATCTAGTGAAATATTTGAATACTTTAGGTCCTTTATGGGG
ATCGGCGTGGGCGAGTGTTGCTACAGCTATACAAGGTTTTGCTCTAACCCCATCAAGTGGTTGCAATTTTGGTTGGAACG
CATTGATAAATAAAAACATAGATGTATCCACAGATAGCATGCTAGACAATTTGAGCAACAAGATTCAGAATTTTACCAAA
GGCGGTGTTGAGGACAATGTGAAAGGCAATGTTCTTTTACAAATAATTAACTCAATAACCGCTCAAGCTTCTACGAATAT
TACAGCTAATGGTTTAATTTGGCTGATTGGCAAAGAATTCACTGCAAATAAACTGCAAAACAACACTACAGCCATGCTTG
CTTTTGCCGCACTAGAATCTATTGTCAAAGGAGCGGACACTGCTGTTCTTCCTGCATATGGTGTAGTCAATCTGCCTGAT
ATTATCATAGGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTAATTTATATTGTTTTTGGGATTTTTGTTTTTATTTC
TTTTATGAAATTGAGAGATATTTCAAATGGCATTCAGATTAACATAGGTTTTGAATACATGCGATTTGTTGGGGGGACAT
TATTCAAAATGGCGATGGTCTCTTTTATCGCCTATGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCCATTTATTTT
GGTTTAGCAGGTGCTTTTGGGCTGAATCAAGTTCTTTTTTGGGCTTTAGATTTAGTGCTGAATTACACTGTTAATTCAAT
TTTACCTGCGGTAAGAGCTGTTTTTTCTAATGTTGGCAACAACGCTCCTAGTTTGTTACAAGGCTTGCAAGTTGCAGGTA
TTTCTTTATTCGCTATTTTTATGCAAGTAACTATCATTATGAGAATAAGCACTGTTGTTGTGAAACCTTTGATAGCGGGG
GCTTTTAGCGGTATTGTGTTCCCTATTGCGGTATGTTTGATCGTGCTAGATTGGTTCAAAGATTCTATGAAAAACATATT
GATATGGTTTATTAATAATTTGTTTATCTTGGTTCTAGCTATTCCTATTTTGCTCTTTGGTGTTTTGGCATTATTGGCAT
TCAATTTGACCATAACGCCCTCTGTTGCTATACAAAACATCAATCAAGGAGGACTGGGTATCGATTCGACTATTGCGAGT
TTGATCACTTTATTTATTTTAAAAGGTTTCATAGAGACGATTATTGAGAGTATCAATGCGATCGTTAATACCATTTTCAG
TTCTGTCTCTATGGATGGTAGCAGAATGGATAGAGAAAGAGATGCCTTAATGGTGGGAAGAGTTGGTGGATCTATGTTTA
AAGGATAA

Protein sequence : 
MFNIKRIFLITIISFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGASGSGKSSGQGVIE
ALSAPLATSLATSNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDVSTDSMLDNLSNKIQNFTK
GGVEDNVKGNVLLQIINSITAQASTNITANGLIWLIGKEFTANKLQNNTTAMLAFAALESIVKGADTAVLPAYGVVNLPD
IIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNGIQINIGFEYMRFVGGTLFKMAMVSFIAYAGFGYLYKISYSIYF
GLAGAFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAG
AFSGIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIAS
LITLFILKGFIETIIESINAIVNTIFSSVSMDGSRMDRERDALMVGRVGGSMFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0529 BAD14028.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag9 AAR03892.1 Cag9 Virulence cag PAI Protein 0.0 99
cag-W AAF80200.1 Cag-W Virulence cag PAI Protein 0.0 98
HP0529 BAD13917.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 NP_207325.1 cag pathogenicity island protein (cag9) Virulence cag PAI Protein 0.0 98
cag9 AAR03864.1 Cag9 Virulence cag PAI Protein 0.0 98
HP0529 BAD14000.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13890.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03953.1 Cag9 Virulence cag PAI Protein 0.0 98
cagW YP_005774540.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13835.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13808.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
orf16 NP_223196.1 cag island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03922.1 Cag9 Virulence cag PAI Protein 0.0 98
cagW YP_005775732.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13862.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13972.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW AGC69796.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 98
cagW YP_003728735.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 98
HP0529 BAD14054.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD13781.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
cagW YP_005779061.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
cagW YP_005777273.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD13945.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH417_02525 YP_006224152.1 cag pathogenicity island protein W VFG0289 Protein 0.0 98