|
Name : HPSH417_02515 (HPSH417_02515) Accession : YP_006224150.1 Strain : Helicobacter pylori Shi417 Genome accession: NC_017739 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein CagY Function : - COG functional category : - COG ID : - EC number : - Position : 502664 - 507844 bp Length : 5181 bp Strand : - Note : COG2948 Type IV secretory pathway, VirB10 components DNA sequence : ATGAATGAAGAAAACGATAAACTTGAAACTTCTAAAAAAACCCAACAACATTCACCCCAAGATTTATCCAATGAAGAAAC AATAAAAGCCAATCACTTTGAAGATTCTTCAAAAGAATCCAAAAAAAGCTCAGATCATCATCTTGACAACTCCACAGAAA CTAAAACCAATTTTGATGAATACAAGTCAGAAGAAACCCAAACTCAAATGGATTCTGGAGGTAATGAAACTTCAGAATCT AGCAATCTAGCAGACAAGTTATTCAAAAAAGCCAGAAAATTAGTTGATAATAAAAGACCTTTCACTCAGCAAAAGAATTT AGATGAAGAAATCCAAGAACCAAACGAAGAAGACGATCAAGAAAATAATGGGTATCAAGAAGAAACTCAAATGGACTTAA TTGATGATGAAACTTCTAAAAAAACCCAACAACATTCACCCCAAGATTTATCCAATGAAGAAACAATAAAAGCCAATCAC TTTGAAGATTCTTCAAAAGAATCCAAAAAAAGCTCAGATCATCATCTTGACAACTACACAGAAACTAAAACCAATTTTGA TGGAGAAAAGTCAGAAGAAATAACTAACGATTCTAACGATCAAGAGATTATCAAAGGAAGCAAAAAGAAATACATTATTG GTGGCATTGTAGTCGCTGTCCTTATCGTGATTATTTTATTTTCTAGAAGCATTTTTCACTATTTCATACCTTTGGAAGAT AAAAGCTCTCGTTTTAGCAAAGACAGGAATCTTTATGTCAATGATGAAATCCAAATAAGGCAAGAGTATAACCGATTACT GAAAGAACGGAATGAAAAAGGCAATATGATCGATAAGAATCTTTTCTTCAATGACGATCCCAATAGAACCTTATACAACT ATTTGAATATTGCAGAAATTGAGGACAAAAACCCATTGAGGGCCTTTTATGAATGTATTAGTAATGGTGGCAACTATGAA GAATGTTTGAAACTTATCAAAGACAAAAAACTTCAAGATCAAATGAAAAAGACTTTAGAGGCTTATAATGACTGCATCAA AAATGCCAAAACTGAAGAAGAAAGGATCAAGTGTTTAGATTTAATCAAAGATGAAAACCTGAAAAAAAGCTTACTGAACC AACAAAAAGTTCAAGTGGCGCTAGATTGTTTGAAAAACGCTAAAACCGATGAAGAACGAAACGAGTGCCTAAAACTCATA AATGACCCTGAGATTAGAGAGAAATTCCGTAAGGAATTAGAGCTTCAAAAAGAGCTTCAAGAGTATAAGGATTGTATCAA AAACGCCAAAACAGAAGCTGAGAAAAACAAATGCTTGAAAGGCTTGTCTAAAGAAGCTATAGAAAGATTGAAACAGCAAG CGCTAGATTGTTTGAAAAACGCTAAAACCGATGAAGAACGAAACGAGTGCTTGAAAAATATCCCCCAAGACTTGCAAAAA GAACTACTAGCTGATATGAGCGTCAAGGCTTACAAGGATTGCGTATCAAAAGCTAGAAATGAAGAAGAAAGAAAAGCTTG TGAGAAATTGCTCACCCCTGAAGCGAAAAAACTTTTAGAGCGACAAGCGCTAGATTGTTTGAAAAACGCTAAAACCGAAG CTGAGAAAAAAAGGTGTGTCAAAGATCTCCCTAAAGACTTACAAAGCGATATTTTAGCTAAAGAGAGCGTTAAAGCTTAT AGAGACTGCGTATCTCAAGCCAGAACTGAAGCTGAGAAAAAAGAATGTGAGAAATTACTCACGCCTGAAGCGAAAAAACT TTTAGAAGAAGAAGCCAAAGAGAGCGTCAAAGCTTATTTGGATTGCGTATCTCAAGCCAAAACTGAAACTGAGAAAAAAG AATGCGAGAAATTGCTCACCCCTGAAGCGAGAAAAAAGTTAGAAGAAGCTAAAAAAAGCGTTAAAGCTTATTTGGATTGC GTATCTCAAGCCAAAACTGAAACTGAGAAAAAAGAATGCGAGAAATTGCTCACGCCTGAAGCGAAAAAACTTTTAGAGCA ACAAGCGCTAGATTGTTTGAAAAACGCTAAAACCGAAGCTGAGAAAAAAAGGTGTGTCAAAGATCTCCCTAAAGACTTGC AGAAAAAGGTTTTAGCCAAAGAGAGTCTTAAGGCTTATAAAGACTGCGTTTCAAGAGCTAGGAATGAAAAAGAGAAAAAA GAATGCGAGAAATTGCTCACGCCTGAAGCGAAAAAACTTTTAGAAGAAGCCAAAGAGAGTCTTAAAGCTTATAAAGACTG CGTATCTCAAGCTAGAACTGAAGCTGAGAAAAAAGAATGTGAGAAATTACTCACGCCTGAAGCGAAAAAACTTTTAGAAG AAGAAGCCAAAGAGAGCGTCAAAGCTTATTTGGATTGCATATCTCAAGCCAAAACTGAAACTGAGAAAAAAGAATGCGAG AAATTGCTCACCCCTGAAGCGAGAAAAAAGTTAGAAGAAGCTAAAAAAAGCGTTAAAGCTTATTTGGATTGCGTATCTCA AGCCAAAACTGAAACTGAGAAAAAAGAATGCGAGAAATTGCTCACGCCTGAAGCGAAAAAACTTTTAGAGCAACAAGCGC TAGATTGTTTGAAAAACGCTAAAACCGAAGCTGAGAAAAAAAGGTGTGTCAAAGATCTCCCTAAAGACTTGCAGAAAAAG GTTTTAGCCAAAGAGAGTCTTAAGGCTTATAAAGACTGCGTTTCAAGAGCTAGGAATGAAAAAGAGAAAAAAGAATGCGA GAAATTGCTCACGCCTGAAGCTAAAAAACTTTTAGAAGAAGCCAAAGAGAGTCTTAAAGCTTATAAAGACTGCGTATCTC AAGCTAGAAATGAAGAAGAAAGAAAAGCTTGTGAGAAATTGCTCACCCCTGAAGCGAGAAAAAAGTTAGAAGAAGCTAAA AAAAGCGTTAAGGCTTATTTGGACTGCGTTTCAAGAGCTAGGAATGAAAAAGAGAAAAAAGAATGCGAGAAATTACTCAC GCCTGAAGCGAAAAAACTTTTAGAAGAAGCTAAAGAGAGTCTTAAAGCTTATAAAGACTGCCTCTCTCAAGCTAGAAATG AAGAAGAAAGAAAAGCTTGTGAGAAATTACTCACCCCTGAAGCGAGAAAACTCTTAGAGCAAGAAGTTAAGAAGAGCGTT AAGGCTTATTTGGACTGCGTTTCGAGAGCTAGGAATGAAAAAGAGAAACAAGAATGCGAGAAATTGCTCACCCCTGAAGC GAGAAAATTTTTAGCGAAGCAAGCGCTAAGTTGTTTGGAAAAAGCTAGAAATGAAGAAGAAAGAAAAGCATGTCTTAAAA ATATCCCTAAAGACTTGCAGAAAGATGTTTTAGCCAAAGAGAGTCTTAAAGCTTATAAAGACTGCCTCTCTCAAGCTAGA AATGAAGAAGAAAGAAAAGCTTGTGAGAAATTACTCACCCCTGAAGCGAGAAAACTCTTAGAACAAGAAGTTAAGAAGAG CGTTAAGGCTTATTTGGACTGCGTTTCAAGAGCTAGGAATGAAAAAGAGAAACAAGAATGCGAGAAATTGCTCACGCCTG AAGCGAGAAAATTTTTAGCGAAAGAGCTCCAACAAAAAGATAAAGCGATCAAAGATTGCTTAAAAAACGCCGATCCTAAC GACAGAGCAGCTATTATGAAGTGTTTGGATGGTTTGAGCGATGAAGAGAAGCTCAAATACCTGCAAGAAGCTAGAGAAAA GGCTGTCTTGGATTGTTTGAAAACGGCTAGGACCGATGAAGAAAAAAGGAAATGTCAAAACCTTTATAGCGATTTGATCC AAGAAATCCAAAATAAAAGGGCACAAAGCAAACAAAATCAATTGAGTAAAACAGAAAGATTGCATCAAGCAAGCGAGTGC TTGGATAACTTAGATGACCCTACTGATCAAGAAGCCATAGAGCAATGTTTAGAAGGCTTGAGCGATAGTGAAAGGGCACT AATTCTAGGAATTAAACGACAAGCTGATGAAGTGGATCTGATTTATAGCGATCTAAGAAACCGCAAAACCTTTGACAACA TGGCGGCTAAAGGTTATCCATTGTTGCCAATGGATTTCAAAAATGGCGGCGATATTGCCACTATTAACGCCACCAATGTT GATGCGGACAAAATAGCTAGCGATAATCCTATTTATGCTTCTATAGAGCCTGACATTACTAAGCAATACGAAACAGAAAA AACCATTAAGGATAAGAATTTAGAAGCTAAATTAGCTAAGGCTTTAGGTGGCAATAAAAAAGATGACGATAAAGAAAAAA GTAAAAAATCCACAGCAGAAGCTAGAGTAGAAAGCAATAAGATAGACAAAGATGTCGCAGAAACTGCCAAAAATATCAGT GAAATCGCTCTTAAGAACAAAAAAGAAAAGAGTGGGGAATTTGTAGATGAAAATGGTAATCCCATTGATGACAAGAAGAA AACAGAAAAGCAAGATGAAACAAGCCCTGTCAAACAAGCCTTTATAGGCAAGAGTGATCCCACATTTGTTTTAGCGCAAT ACACCCCTATTGAAATCACTCTGACTTCTAAAGTAGATGCCACTCTCACAGGTATAGTGAGTGGGGTTGTGGCCAAAGAT GTATGGAACATGAACGGCACTATGATCTTACTAGACAAAGGCACTAAGGTGTATGGGAATTATCAAAGCGTGAAAGGTGG CACACCCATTATGACACGCTTAATGATAGTCTTTACTAAAGCCATTACGCCTGATGGTGTGATAATACCTCTAGCAAACG CTCAAGCAGCAGGCATGCTAGGTGAAGCAGGGGTAGATGGCTATGTGAATAATCACTTTATGAAGCGCATAGGCTTTGCT GTGATAGCAAGCGTGGTTAATAGCTTCTTGCAAACTGCGCCTATCATAGCTCTAGATAAACTCATAGGCCTTGGCAAAGG TAGAAGTGAAAGGACACCTGAATTTAATTACGCTTTGGGTCAAGCTATCAATGGTAGTATGCAAAGTTCAGCTCAGATGT CTAATCAAATTCTAGGGCAACTGATGAATATCCCCCCAAGTTTTTACAAAAATGAGGGCGATAGTATTAAGATTCTCACA ATGGACGATATTGATTTTAGTGGCGTATATGATGTTAAAATTACCAACAAATCTGTGGTAGATGAAATTATCAAACAAAG CACTAAAACTTTGTCTAGAGAGCATGAAGAAATCACCACAAGCCCCAAAGGTGGCAATTAA Protein sequence : MNEENDKLETSKKTQQHSPQDLSNEETIKANHFEDSSKESKKSSDHHLDNSTETKTNFDEYKSEETQTQMDSGGNETSES SNLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANH FEDSSKESKKSSDHHLDNYTETKTNFDGEKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLED KSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYE ECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLI NDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQK ELLADMSVKAYKDCVSKARNEEERKACEKLLTPEAKKLLERQALDCLKNAKTEAEKKRCVKDLPKDLQSDILAKESVKAY RDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTETEKKECEKLLTPEARKKLEEAKKSVKAYLDC VSQAKTETEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSRARNEKEKK ECEKLLTPEAKKLLEEAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCISQAKTETEKKECE KLLTPEARKKLEEAKKSVKAYLDCVSQAKTETEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKK VLAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSQARNEEERKACEKLLTPEARKKLEEAK KSVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSV KAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQALSCLEKARNEEERKACLKNIPKDLQKDVLAKESLKAYKDCLSQAR NEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPN DRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRAQSKQNQLSKTERLHQASEC LDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNV DADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEARVESNKIDKDVAETAKNIS EIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKD VWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFA VIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILT MDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cag-Y | AAF80198.1 | Cag-Y | Virulence | cag PAI | Protein | 0.0 | 93 |
| cagY | YP_005777271.1 | cag pathogenicity island protein Y VirB10-like protein | Virulence | cag PAI | Protein | 0.0 | 93 |
| HP0527 | BAD14052.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 93 |
| cagY | AGC69789.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 93 |
| HP0527 | BAD13833.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 92 |
| cagY | YP_005774542.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 92 |
| cagY | AGC69785.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 92 |
| cagY | AGC69788.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 92 |
| HP0527 | BAD14026.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 91 |
| HP0527 | BAD13970.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 91 |
| HP0527 | BAD13998.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 90 |
| cagY | AGC69792.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 88 |
| HP0527 | BAD13888.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 87 |
| HP0527 | NP_207323.1 | cag pathogenicity island protein (cag7) | Virulence | cag PAI | Protein | 0.0 | 87 |
| cagY | YP_005779063.1 | cag island protein | Virulence | cag PAI | Protein | 0.0 | 85 |
| HP0527 | BAD13779.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 85 |
| cagY | AGC69786.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 83 |
| HP0527 | BAD13806.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 83 |
| HP0527 | BAD13915.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 82 |
| cagY | AGC69787.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 82 |
| orf13/14 | NP_223194.1 | cag island protein | Virulence | cag PAI | Protein | 0.0 | 80 |
| cagY | YP_003728737.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 79 |
| HP0527 | BAD13943.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 79 |
| HP0527 | BAD13860.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 79 |
| cagY | YP_005775730.1 | cag pathogenicity island protein Y VirB10-like protein | Virulence | cag PAI | Protein | 0.0 | 79 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPSH417_02515 | YP_006224150.1 | cag pathogenicity island protein CagY | VFG0287 | Protein | 0.0 | 87 |
