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Name : HPSH417_07575 (HPSH417_07575) Accession : YP_006225125.1 Strain : Helicobacter pylori Shi417 Genome accession: NC_017739 Putative virulence/resistance : Virulence Product : type IV secretion system protein VirD4 Function : - COG functional category : - COG ID : - EC number : - Position : 1575473 - 1577620 bp Length : 2148 bp Strand : - Note : COG3505 Type IV secretory pathway, VirD4 components DNA sequence : ATGAAAATGCAATTTGTGAAAGCTTTTTGCGTGCTTTTTAGCATTTTACTTATCCCCTTATTTTTTATCTTGGCAAATTA TTATGTTTTTGATGCCATAAATTCGTTTAGACAGGCTTATTTCTTTTCTCAAAGCGTGTTTATAGGGCTTTATAAGGGAG CGAGTATCTTAGATTTAAAATTTGAAGTCTATATCACTATGATAATGTCTTTAATGCCCTTAGTAGCTACGATTTATATG AGTATTCAAAAGACTAAAGAAACTTCGCATGGCTATGCGAGATGGGCTAATGTTAAAGACATAGAGTGCTTTAAAGTCTT TAGTAAAGAGGGCTTTTGTAAGGTAGTGCATAGATTAGGGGTGCAATTTGACAAGGGCTTTATTCTAGGTAAATTTGGTT TTCCAAAACTTAGAGATGTGTGTTATGACAAGCCCTTAGGAGCCATGATTGTTGCACCCCCTGGAGCTGGTAAAACCGCA TGCGTGGCTTTACCCAATTTATTGACTTTACCTAATAGCTGTATTATCACTGATATTAAAGGCGAACTAAGAGATAAGAC TGCTGGATATAGACAAAAATTCTTAAACAATAGGATTTTAATCTTTAATCCCTATGGTGATGATAATACTTGTTATTTCA ATCCTTTTGATAAAAGGATTGTAAAACCCATGAACTTTGACCAACGCCTAAGACTTGTGCAAGAGAATGCTAATAATGTC TTTATTAGCGAAGAAAAGGGCGAAGACCATTGGGTATCTAAAGCGAAAGATTTGTTTAGCTTTTATGCCTTGCATGATGT TTGTTCCAAAGATGAAACAAACTTTTTTGATGTGGCTATGGGTCCAAATAGAGACTATGTCAATTTAATTGATAAAAGAA GTCGCTATTACAAACAGCTCTATCAGCACGACAAAAAGACAGGCGAAATTATCCTAGACCCACAAACTAATGAGCCTATT TTAATTCCTAATGTGAATGCGAGAAAATTGTGGTATTTGCAAGTTTCAGAGCAAAAATACGCTGACCCCAAAGACCCTAG AAATTTTGACCCAAATGAGCCTGAACCAGCCCCTAGAAGTGAAGGGGCGTTAGATGAAATTGTAAGAAATGATGCAAGAG CGTGGGCTAATAGTGCTGAAGAAGAATTTGCAAGTATTATTTCTACTTTCAATCGCTTTGTGTCTGTTTTTAAAAGCAAT CAAGTAAGAATTGCTACTTCTAAAATGAGCTTTGATTATGAAGAATTAAGAACAGACAATATCAGTCTTTATATTGTGAT TGCTCAAAAAGACATCAACACGCTTGCCCCCTTAGTTAGAGTGATTTTAGAAAGTATTGCTAAAAACTTACTAACTAATG AAAGTTCTAAAAAAGAAGAACGCATTTATATGATTTTAGATGAATTTGTTAGATTTGGTAAGTTGCCTTTCTTGTTAGAA ATGCCTGCACTTTGTCGCTCTTATAATGTCGTTCCCTTATTCATCACGCAAGATTATGCGATGATTAGAAAAAATTATAG CGATGATGATTTGAAAATCTTAAAAGGCGTGGTGCATTATAACATTGTCTTTAAGATGAATAGCGCTGAAGATGCTGAGA TTGTTTCTAAAGAAGTGGGCGAATTCACTAGACAATCTAAAAATTATTCTACTGAAAAGGGTCAGCTAGTCTTTGGAGGC AGTTCTTCTTATAGCCATGAGGGTAGAAATTTACTTACAGCTCAAGACATTATGAATATAAAATCAGATGAAGTTATTGT CATTGTTACAGGAGCTAAAGCGACCCCTTTAAAACTTAAAGCTAATTATTGGTTTAGAGATAAAGAGCTTTTAAAAAGAG CTAACTTGCCTATTGACTTAGAAGTAGAAAGAAAAAGATTTAAAGAGTCTACGCAACCCACTACTTCACAAAAAGAGAGT GAAAATTCAAATCTAACAGAAAGCGAGAAAGATAATGAAAACCCCACTACTTCACAAGAAAAAAACAAGAATGAAAACAC AGAGCAAGAAAATCACAATGAAATTGATGAGATTTTAAAAAAGCCACTGAGTGAAATCAGCATGGAAGAAAAAAGAGCCT TATTTAAGAAAATGCAACAAGGCGATGAACAAAGCGAACAAGAAGTTCTACAAGACACCCAAAGTTAA Protein sequence : MKMQFVKAFCVLFSILLIPLFFILANYYVFDAINSFRQAYFFSQSVFIGLYKGASILDLKFEVYITMIMSLMPLVATIYM SIQKTKETSHGYARWANVKDIECFKVFSKEGFCKVVHRLGVQFDKGFILGKFGFPKLRDVCYDKPLGAMIVAPPGAGKTA CVALPNLLTLPNSCIITDIKGELRDKTAGYRQKFLNNRILIFNPYGDDNTCYFNPFDKRIVKPMNFDQRLRLVQENANNV FISEEKGEDHWVSKAKDLFSFYALHDVCSKDETNFFDVAMGPNRDYVNLIDKRSRYYKQLYQHDKKTGEIILDPQTNEPI LIPNVNARKLWYLQVSEQKYADPKDPRNFDPNEPEPAPRSEGALDEIVRNDARAWANSAEEEFASIISTFNRFVSVFKSN QVRIATSKMSFDYEELRTDNISLYIVIAQKDINTLAPLVRVILESIAKNLLTNESSKKEERIYMILDEFVRFGKLPFLLE MPALCRSYNVVPLFITQDYAMIRKNYSDDDLKILKGVVHYNIVFKMNSAEDAEIVSKEVGEFTRQSKNYSTEKGQLVFGG SSSYSHEGRNLLTAQDIMNIKSDEVIVIVTGAKATPLKLKANYWFRDKELLKRANLPIDLEVERKRFKESTQPTTSQKES ENSNLTESEKDNENPTTSQEKNKNENTEQENHNEIDEILKKPLSEISMEEKRALFKKMQQGDEQSEQEVLQDTQS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virD4-1 | YP_002301090.1 | VirD4 coupling protein | Virulence | cag PAI | Protein | 3e-130 | 53 |
