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Name : HPSH417_05560 (HPSH417_05560) Accession : YP_006224734.1 Strain : Helicobacter pylori Shi417 Genome accession: NC_017739 Putative virulence/resistance : Virulence Product : ComB3 protein Function : - COG functional category : - COG ID : - EC number : - Position : 1158102 - 1159337 bp Length : 1236 bp Strand : + Note : COG2948 Type IV secretory pathway, VirB10 components DNA sequence : ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTGA TAAAACGCTTATTAAGCCACAAAGTCCATCCTTCAATTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT TAGCGTCTCGTGTTAGCAGCCAAAAAGAAACACAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATACAAA GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCTAGCAGTGAAAA CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGTCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG GGTCAATATTATACTAAGCGATGCTAATGGGGCTGATATCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC TGGTATCAGCCTAAATGATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG Protein sequence : MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE NIEKTQKDLDDFNALVQKLPNLPKDFDKTLIKPQSPSFNYNTANEEEKTRLVILASRVSSQKETQPPTSIKNSVSNTKYK EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPVILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDANGADIKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNDIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF NEEKEQNNDTK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virB10-1 | YP_002301098.1 | VirB10 type IV secretion protein | Virulence | cag PAI | Protein | 3e-132 | 80 |
